[PyMOL] Cel shading in PyMOL

Hi all, Has anyone figured out a good way to do Cel shading in pymol? Or even the sort of variables to play with? Cheers, Jacob -- New Year. New Location. New Benefits. New Data Center in Ashburn, VA. GigeNET is off

Re: [PyMOL] Cel shading in PyMOL

Hi Jacob, What about the Goodsell-like representation from here ? Cheers, Osvaldo. On Tue, Jan 13, 2015 at 7:29 AM, Jacob Lewis wrote: Hi all, > > Has anyone figured out a good way to do Cel shading in pymol? Or even the > sort of variables to play

Re: [PyMOL] Cel shading in PyMOL

Hi Jacob & Osvaldo, the ray tracer has cel shading as ray trace mode 3. PyMOL> set ray_trace_mode, 3 PyMOL> ray See also: http://pymolwiki.org/index.php/Ray#Modes Hope that helps. Cheers, Thomas On 13 Jan 2015, at 08:07, Osvaldo Martin wrote: > Hi Jacob, > > What about the Goodsell-like

Re: [PyMOL] exporting maps

Hi Daniel, PyMOL 1.7.4 has a Python API function to access a map as a numpy array: cmd.get_volume_field, it takes the name of a map or volume object as its first argument. PyMOL doesn't support any map formal for export, but with this function you could write your own routine. Example: cmd.fe

Re: [PyMOL] The angle between two subunit of a protein

Hi Yeping, depends on what you exactly want to measure. I recommend to try the "angle_between_domains" command from the "psico" plugin. Example: 1) Download and unzip https://github.com/speleo3/pymol-psico/archive/master.zip 2) In PyMOL: run /path/to/psico/fullinit.py fetch 1a00, async=0 angle_

Re: [PyMOL] Cel shading in PyMOL

Hi Jacob, If you have the right mix of display drivers and Pymol version, you can try GLSL shaders. http://www.pymolwiki.org/index.php/GLSL_Shaders Unfortunately, it does not work flawlessly across platforms and I have not invested any more time figuring it out because the shader system in Py

[PyMOL] Lift PyMOL Viewer Window

Hi, I’m currently developing a PyMOL plugin and I am currently unable to achieve this : Lift the PyMOL Viewer Window (the one with 3D structures shown). We use a lot of Wizards and upon starting a new Wizard, I want the PyMOL viewer window to raise above others (done with the TKinter .lift() me