DeLano Scientific wrote:
> Donnie,
>
> Hmm...it seems "ObjectGroup.c" was left out of setup.py. It should be fixed
> now.
>
> Thanks for the reminder!
Thanks much! I really appreciate your quick response.
Thanks again,
Donnie
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Donnie,
Hmm...it seems "ObjectGroup.c" was left out of setup.py. It should be fixed
now.
Thanks for the reminder!
Cheers,
DeLano Scientific LLC
Email Support Services
> -Original Message-
> From: pymol-users-boun...@lists.sourceforge.net
> [mailto:pymol-users-boun...@lists.sourcefo
I've been unable to start PyMOL from recent subversion builds. It worked
in r2738 but fails in 2740 and newer (possibly 2739 as well, didn't
check). Here's what I get:
Traceback (most recent call last):
File "/usr/lib/python2.4/site-packages/pymol/__init__.py", line 109, in ?
import pymol
> Is there any easy way to fixed it?
Just for the record everyone:
PyMOL's automatic logging facility is currently unreliable. That is because
emphasis has shifted to PyMOL Session files (.PSE) instead, which are a more
robust and convenient way of preserving "state" and for sharing content with
Hi,
I don't know whether it is a bug or not. I opened a pdb file, selected
a residue by left-clicking it, and hided it. When I resumed the
project using the log file, the residue was still there. It seems that
sele is not valid in log file. Following is what is in the log file.
"cmd.select('sele',
Shivesh,
New colors defined in the color editor can subsequently be used in "color"
commands.
color myNewColor, resi 100
Cheers,
DeLano Scientific LLC
Email Support Services
> -Original Message-
> From: pymol-users-boun...@lists.sourceforge.net
> [mailto:pymol-users-boun...@lists.sou
Nian,
What kind of map format is it? One of the two programs may be normalizing
the map, but not the other.
Cheers,
DeLano Scientific LLC
Email Support Services
> -Original Message-
> From: pymol-users-boun...@lists.sourceforge.net
> [mailto:pymol-users-boun...@lists.sourceforge.ne
Kelvin,
Those are clipping planes -- try using the scroll wheel on your mouse to
increase the slab depth.
Cheers,
DeLano Scientific LLC
Email Support Services
> -Original Message-
> From: pymol-users-boun...@lists.sourceforge.net
> [mailto:pymol-users-boun...@lists.sourceforge.net] On
Hello all,
I was hoping someone could tell me what I am doing wrong. I have on many
occasions produced nice pictures of my models using pymol, some for
publication. However, I occasionally run into the problem where I load
pdbs or run a .pml file, and the picture on the screen looks like pie
Am Dienstag, 24. Oktober 2006 14:13 schrieb Neil Ranson:
> So in summary, there is no inherent problem with PyMOL, Suse 10.0
> x86_64, nvidia cards and even recent beta drivers to the best of my
> knowledge.
Hi Neil,
what's exactly the output of pymol when it's "crashing". Are you using
the "nv
Dear All,
I wrote a while ago asking for advice with PyMOL crashing a Suse10.0
graphics workstation.
I thought I'd better also report that we (eventually) traced the problem
to the graphics card itself (an nvidia 6600GT). Whilst this card
appeared totally stable within Windows, it obviously
Hi,
I have downloaded and instaled pymol v99_rc6 on my system, AMD X2
processor; following is the corresponding line to the uname -a command:
Linux uniparc7 2.6.17-1.2187_FC5 #1 SMP Mon Sep 11 01:16:59 EDT 2006
x86_64 x86_64 x86_64 GNU/Linux
However it is really slow, even if it seems to detect
Hi Eva,
It may be that the secondary structure information is not set
(assuming that you have some secondary structure). You can try to run
'dss' or if that fails you can try to resort to 'util.ss' which may do
the trick. Alternatively, you can set the secondary structure
information manually, us
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