Re: [PyMOL] c-alpha only model & show cartoon

Doug, Unfortunately, I do not think is not possible: PyMOL requires a full backbone in order to reliably generate cartoon geometries other than a simply backbone tube. Sorry! Cheers, Warren -- DeLano Scientific LLC Subscriber Support Services mailto:supp...@delsci.com -Original Message--

[PyMOL] c-alpha only model & show cartoon

Hi All, ( I am unable to search the PyMOL mailing list archives for this question, per this message: http://sourceforge.net/mailarchive/forum.php?thread_name=200807281639.m6SGcvAe006759%40apollo.hosting4less.com&forum_name=pymol-users ) How can a cartoon cylinder diagram be displayed for a

Re: [PyMOL] move density

Bart, The way to do this is to apply molecular transformations first and then matrix_copy (formerly matrix_transfer) from the transformed molecule object to the map object before issuing the isomesh command. load mol1.pdb load mol2.pdb load map1.ccp4 load map2.ccp4 align mol2CA, mol1CA

Re: [PyMOL] Searching mailing list

Lim, For better or worse, pymol-users is hosted at the SourceForge open-source development site, and right now it appears that none of the thousands mailing lists hosted there can be searched. This may be due to the fact that they are in the midst of a data center migration... Hopefully the pro

[PyMOL] move density

Dear all, is it possible by now to apply a rotation matrix to a electron density map object? If I am not mistaken, there was a way to output rotation matrix of 'align' (or 'super' and so on), but rotating an isomesh object might be the crucial point. Any hints or future annoucements (beta?)