Hi Jason,
Thanks a lot for the performance info. I think that a full capsid would be
around 300,000 atoms, so your info is very helpful.
We will probably invest in the newest version of pymol when we purchase the
computer.
On Fri, Jun 15, 2012 at 12:19 PM, Jason Vertrees <
jason.vertr...@schro
Hi Shane,
With PyMOL v1.5 and later, and a reasonable machine you should be able
to use large systems (>250,000, and upward of 1,000,000+ atoms)
without much of a problem. Using the following simple test script:
fetch 2xpj, type=pdb1, async=0
split_states 2xpj
delete 2xpj
orient
For these 240,00
Hi Shiven,
> Thought some of you may be interested in this:
>
> http://pymolwiki.org/index.php/GLSL_Shaders
Very nice work! Flexibility of representation and speed were the two
main reasons we advanced to GLSL shaders over immediate mode rendering
and display lists for PyMOL. Shaders offer powerf
Jared,
Very cool script -- and beautiful visualizations.
It's good to note that since it's in git-repo the new Plugin Manager
can access it (just be sure to install COM and transformations,
first). What used to take 3--5 minutes (downloading each script and
putting them somewhere after cleaning u
Christian,
you should be able to get the values from the tuple returned by
get_view(). Looking into this would be a good starting point.
from my old notes (origin unknown...):
0-8 is the 3x3 rotation matrix
9-11 is the camera location (I think -- been a while...)
12-14 is the origin of rotation
Hello all -
I'd like to share with you this script that I recently added (with Troels'
help) to the PyMOL Wiki.
http://www.pymolwiki.org/index.php/Elbow_angle
Given a PyMOL object containing an antibody Fab fragment complex, light and
heavy chain IDs for the Fab, and residue numbers for the bo
Dear all,
it is nice to set via mouse wheel the clipping. Is it possible to get this
values somewhere out of pymol that one could use the actual values in a
script? I find it a bit complicated and time consuming to play always a few
times with the values in a script, to find values which looks
