Hi Vishwas,
atom connectivity is the same for all states unless you have a
discrete object. Try this:
PyMOL set connect_mode, 1
PyMOL load file.pdb, discrete=1
Cheers,
Thomas
Vishwas Vasisht wrote, On 10/05/12 08:59:
Hi Thomas,
Thanks, it works for single frame. But when I use
Does every MODEL ENDMDL have a unique Connection list?
Can you show me your PDB file?
Jordan
On Oct 5, 2012, at 1:59 AM, Vishwas Vasisht vishwas.vasi...@gmail.com wrote:
Hi Thomas,
Thanks, it works for single frame. But when I use multiple frame (using
MODEL and ENDMDL), the
Mike,
Many distros have PyMOL already in their package management system.
Have you tried that first?
I suggest downloading the latest code, v1.5.0.4, from the open-source
project page, if you want to build by hand.
To build, you need Python 2.7 or later and the process is very simple:
sudo
Hi Mike,
I suggest downloading the latest code, v1.5.0.4, from the open-source
project page, if you want to build by hand.
see comments in my last post, I think that is what I did. Although
autoreconf may not have helped anything.
I see the confusion now. We'll update SourceForge on our
From: jason.vertr...@schrodinger.com
Date: Fri, 5 Oct 2012 09:36:29 -0500
Subject: Re: [PyMOL] I just built pymol, comes up but hangs on any attempt to
view a test pdb.
To: marchy...@hotmail.com
CC: li...@cowsandmilk.net;
Hi Ben,
If your machine does have shader issues and they don't automatically
disable, please let us know.
What would be the symptoms/output if this is happening?
I get occasional reports from our users with errors like this:
CShaderPrg_New-Error: vertex shader compilation failed
Hi Jason,
If your machine does have shader issues and they don't automatically
disable, please let us know.
What would be the symptoms/output if this is happening?
I get occasional reports from our users with errors like this:
CShaderPrg_New-Error: vertex shader compilation failed
Hello stereophiles,
many thanks to Jason Vertrees, Roger Rowlett and Sabuj Pattanayek for
sending me information about their 3D stereo beamer setup.
I recently purchased the following equipment and was not even sure it
would work:
- Optoma GT750, 1280 x 720 pixel resolution, 3000 ansi
Hi Jason,
The key seems to be,
PyMOLShader_NewFromFile-Warning: default shader files not found, loading
from memory.
We load shaders from disk, but when they're not found we just read in
some basic default shaders from code, which is what this is doing. Did
you move or change
Ben,
Ah, I bet this is because they are running it via X-forwarding over an
ssh tunnel. I'm pretty certain that one of the reports came from a user
running PyMOL this way, and I can duplicate the error messages running over
a tunnel.
Is this actually going to break anything?
Yes -- volumes
Hi all,
I would like to use ray_trace_mode 1 to render some structures. However, I am
also using isomeshes within the same picture and do not want them to have a
black outline. Is there any way to have the black outline only for specified
objects or to make them transparent in isomeshes?
Hi Jason,
Ah, I bet this is because they are running it via X-forwarding over an
ssh tunnel. I'm pretty certain that one of the reports came from a user
running PyMOL this way, and I can duplicate the error messages running over
a tunnel.
Is this actually going to break anything?
Hi Arne,
Unfortunately, ray_trace_mode is a global setting. You get the gain on
all objects. I agree is looks poor on isomeshes. We should consider
making ray_trace_gain object/atom level.
Cheers,
-- Jason
On Fri, Oct 5, 2012 at 2:26 PM, Arne Dieckmann adiec...@googlemail.com wrote:
Hi all,
On Fri, Oct 5, 2012 at 3:48 PM, Bradford R. Battey, Jr.
bbat...@umich.edu wrote:
On Oct 5, 2012, at 4:33 PM, Sabuj Pattanayek sab...@gmail.com wrote:
We've tried the Asus VG278H with the built-in emitter and the nvidia
3d vision v2 goggles (one pair included with the monitor) in Linux and
it
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