[PyMOL] fetch biounits or NMR model

2013-02-08 Thread Zimmermann, Michael T., Ph.D.
Dear PyMOL Users, I've been using fetch and fetchlocal (from the wiki) for working with multiple datasets of structures, but have a nagging issue that I have not found an efficient way to solve. I typically download the first biological unit, which works for X-ray structures. The trouble is

[PyMOL] Managing Viewport Location

2013-02-08 Thread Wilson Omesiete
Is it possible to control the screen location of the viewport during run time through the API? Currently I am using... import os, wx, __main__ app = wx.App() os.environ['PYMOL_PATH'] = C:\Python27\PyMOL __main__.pymol_argv = [ 'pymol', -qx] # Quiet and no GUI import pymol

Re: [PyMOL] Managing Viewport Location

2013-02-08 Thread Jason Vertrees
Hi Wilson, The following works for me: # put the PyMOL window at 100,100 on startup ./pymol -X 100 -Y 100 I don't think we can programmatically move the OpenGL window once it's started up, however. On MacOS X 10.8 and the windowing system overrides these values; Linux and Windows should

Re: [PyMOL] Managing Viewport Location

2013-02-08 Thread Takanori Nakane
Hi, I don't think we can programmatically move the OpenGL window once it's started up, however. What about cmd.window()? For example, cmd.window(position, 500, 300) It worked fine on Ubuntu. help window says DESCRIPTION window controls the visibility of PyMOL's output window USAGE