Re: [PyMOL] Goodsell colouring

2014-12-05 Thread Andreas Förster
Hi Jacob, color light_shade1, e. c and (c;a,c,e) color light_shade2, e. c and (c;b,d,f) Replace light_shade1 and light_shade2 with the actual colors you want to use. Andreas On 05/12/2014 12:24, Jacob Lewis wrote: > Hi, > > I am trying to colour a protein which is a hexamer using the “goods

Re: [PyMOL] Goodsell colouring

2014-12-05 Thread Andreas Warnecke
Hi Jacob, I'm not familiar with "goodsell", but some selection algebra should be a solution: Try something like: util.cbaw # color by atom (white carbons) color grey80, chain B and elem C color grey70, chain C and elem C #... etc. There are also pymol wiki pages for coloring and selection algebr

[PyMOL] Goodsell colouring

2014-12-05 Thread Jacob Lewis
Hi, I am trying to colour a protein which is a hexamer using the “goodsell” colouring method where by carbons are a light shade and all other atoms are a darker shade, however I want to colour alternating subunits of the hexamer for clarity. Is there a way of selecting two different carbon col

Re: [PyMOL] select state not working

2014-12-05 Thread Spencer Bliven
I noticed that my response didn't go through due to the attachment being to big. The PDB file is here: https://dl.dropboxusercontent.com/u/41995424/4BVNAa-2Z73Aa.pdb -Spencer On Thu, Nov 6, 2014 at 2:44 PM, Spencer Bliven wrote: > I hadn't heard about any plans to convert biological assemblies

Re: [PyMOL] Is it possible to move different subunits independently using Pymol

2014-12-05 Thread Spencer Bliven
You can translate and rotate objects using the Editing mouse mode ('Mouse' > '3 Button Editing'). Objects can be rotated with shift-left click or translated with shift-middle click. You can also modify just a segment by 'picking' the boundaries (command/ctrl left click). Use the 'unpick' command to