Thank you all for your help,
I am sorry for not framing my question clearly. So I want to learn
what percentage of residues are helical in each peptide structure (is this
possible on PyMOL?); then I can compute the difference in helical content %
between both structures.
Many thanks,
Neena
On
Hi Neena,
Not sure if I understand your question correctly, but if you are looking
for the number of helix residues or the relative helix content, you can do
this:
count_helix = cmd.count_atoms("guide & ss H")
count_all = cmd.count_atoms("guide")
print("Number of helix residues:", count_helix)
