[PyMOL] movie.produce async off

2014-10-08 Thread João M . Damas
for movie.produce to finish? Like, a wait command, maybe? If not, I think that a possible improvement would be to make an async flag like in fetch. Cheers, João -- João M. Damas PhD Student Protein Modelling Group ITQB-UNL, Oeiras, Portugal Tel:+351-214469613

Re: [PyMOL] Pymol molecular visualisation

2015-04-11 Thread João M . Damas
-archive.com/pymol-users@lists.sourceforge.net -- João M. Damas PhD Student Protein Modelling Group ITQB-UNL, Oeiras, Portugal Tel:+351-214469613 -- BPM Camp - Free Virtual Workshop May 6th at 10am PDT/1PM EDT Develop your own

Re: [PyMOL] transparent figure

2015-08-04 Thread João M . Damas
://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- João M. Damas PhD Student Protein Modelling Group ITQB-UNL, Oeiras, Portugal Tel:+351-214469613

Re: [PyMOL] hiding unreal bonds

2015-08-14 Thread João M . Damas
(PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- João M. Damas PhD Student Protein Modelling Group ITQB-UNL, Oeiras, Portugal Tel:+351-214469613

Re: [PyMOL] slab settings

2015-09-17 Thread João M . Damas
Cmd.get_view gives you a matrix where the 9th, 10th and 11th numbers give you the origin of rotation relative to the camera, and 15th and 16th gives you the front and rear plane distance from the camera, respectively. That plus some math, and I think you are done. Maybe there is an easier way

Re: [PyMOL] Using cartoon putty-like command

2015-10-05 Thread João M . Damas
> > ___ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://ww

Re: [PyMOL] on contact surface and domain angle

2016-04-04 Thread João M . Damas
t; -- > > ___________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)

Re: [PyMOL] Iterate scenes smoothly

2016-05-09 Thread João M . Damas
__ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- João M. Damas PhD Student Protein Mode

Re: [PyMOL] how to keep the atom order when convert mol2 file to pdb in pymol

2016-08-12 Thread João M . Damas
, sFlow and other flows. Make informed decisions using capacity > planning reports. http://sdm.link/zohodev2dev > ___ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >

[PyMOL] pymolwiki down

2016-08-05 Thread João M . Damas
Hi guys, Am I the only one experiencing problems accessing pymolwiki.org? I guess people are using google cache, but any idea of when it will be working again? Best, João -- João M. Damas PhD Student Protein Modelling Group ITQB-UNL, Oeiras, Portugal Tel:+351-214469613

Re: [PyMOL] Segmentation fault

2017-03-27 Thread João M . Damas
Nobody experiencing the same issues? Any tips on what I may be doing wrong on the installation? João On Fri, Mar 17, 2017 at 4:08 PM, João M. Damas <jmda...@itqb.unl.pt> wrote: > Dear all, > > I started experiencing segmentation fault on a pymol that I had installed > through

[PyMOL] Segmentation fault

2017-03-17 Thread João M . Damas
`` Executive: Loading version 1.803 session... ./pymol: line 3: 29221 Segmentation fault "/usr/bin/python2.7" "/data/joao/maindisk/software/pymol-svn/modules/pymol/__init__.py" "$@" ``` Any clues? Am I doing something wrong? Thanks, João -- João M. Damas PhD St

Re: [PyMOL] Segmentation fault

2017-04-11 Thread João M . Damas
ckc=no" I get a working pymol with revision 4170. > > Have you tried creating a new user and test pymol from that account? That > should help you identify if it is solely a problem with your own account. > > HTH, > Folmer > > > On 2017-03-28 03:15, João M. Damas w

Re: [PyMOL] Segmentation fault

2017-04-12 Thread João M . Damas
iliar with gdb, but considering that > you already spend time on this problem and are willing to spend more, I > think it's worthwhile. > > Cheers, > Thomas > > On 11 Apr 2017, at 19:08, João M. Damas <jmda...@itqb.unl.pt> wrote: > > > Thanks for the feedback,

Re: [PyMOL] Calculating center of mass for the entire protein

2017-04-06 Thread João M . Damas
>>>>>> engaging tech sites, Slashdot.org! http://sdm.link/slashdot >>>>>> >>>>>> ___ >>>>>> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >>>>>> Info Page: https://lists.source

Re: [PyMOL] Outline width for ray tracing

2017-06-05 Thread João M . Damas
gt; engaging tech sites, Slashdot.org! http://sdm.link/slashdot > _______ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-u