The columns of your pdb aren't properly aligned; you have extra spaces
where they shouldn't be. You can fix it in a text editor. See
https://www.wwpdb.org/documentation/file-format-content/format33/sect9.html
for more information.
hth
Kevin
--
Kevin Jude, PhD (he/him/his)
Structural Biology
and chain C and resi 87-95 or (protein_A and chain
A and resi 29-33 or resi 70-73 or resi 116-119)
--
Kevin Jude, PhD
Structural Biology Research Specialist, Garcia Lab
Howard Hughes Medical Institute
Stanford University School of Medicine
Beckman B177, 279 Campus Drive, Stanford CA 94305
Phone
https://pymolwiki.org/index.php/Modeling_and_Editing_Structures
--
Kevin Jude, PhD
Structural Biology Research Specialist, Garcia Lab
Howard Hughes Medical Institute
Stanford University School of Medicine
Beckman B177, 279 Campus Drive, Stanford CA 94305
Phone: (650) 723-6431
On Wed, Aug 1, 2018
not visible in electron
density. If you're talking about other Ser residues then you'll have to
give more information.
Best wishes
Kevin
--
Kevin Jude, PhD
Structural Biology Research Specialist, Garcia Lab
Howard Hughes Medical Institute
Stanford University School of Medicine
Beckman B177, 279
Hi Ahmad, there are a number of pymol tutorials online that should be
helpful. From the first page of a Google search, some that look helpful
include:
https://www.mrc-lmb.cam.ac.uk/rlw/text/MacPyMOL_tutorial.html
-factors of each atom in your molecule, perhaps with meta information
from the experiment that generated it. In other words, pse will save your
work, but pdb will just save your molecule.
--
Kevin Jude, PhD
Structural Biology Research Specialist, Garcia Lab
Howard Hughes Medical Institute
Stanford
This is quite a few notches higher than my mid-2011 MBP, which runs pymol
just fine. My machine has one advantage, though: a 15" display. If she's
not connecting to an external display, I think it would be worth
sacrificing some computing power for screen real estate.
--
Kevin Jude, PhD
Res
