[PyMOL] interlaced and checkerboard stereo problems

2010-05-14 Thread aaron bryden
We are having problems getting interlaced and checkerboard stereo to work with the latest incentive builds. On both windows xp and OS X 10.6 we can enable both byrow/bycolumn/checkerboard stereo and in all cases we see two copies of the molecule but no checkerboard or interlaced pattern. In both

Re: [PyMOL] interlaced and checkerboard stereo problems

2010-05-14 Thread aaron bryden
As a further twist, the zalman build works fine for both interlaced and checkerboard. Aaron On Fri, May 14, 2010 at 4:38 PM, aaron bryden bry...@wisc.edu wrote: We are having problems getting interlaced and checkerboard stereo to work with the latest incentive builds. On both windows xp and OS

[PyMOL] stereo stretching on 3d HDTV

2010-05-13 Thread aaron bryden
We are trying to use pymol on our new 3D HDTV that accepts a single frame side by side stereo format and stretches the two sides into a full frame. This works somewhat well with Pymol's geowall setting but the image is (of course) stretched. Is their any way to make PyMOL squeeze each side of the

[PyMOL] Latency in updating pointer from external input device

2010-03-12 Thread aaron bryden
We are attempting to use a set of external input devices (wiimotes) to allow interaction with pymol and are achieving this by having a seperate thread running that talk to the wiimote over bluetooth and sends commands to pymol when appropriate. Commands such as rotate or move the view go through

[PyMOL] Compilation issues on Win32 vs2008

2010-02-15 Thread aaron bryden
points to precompiled header issues but as far as we can tell, distutils is not making use of precompiled headers. If anyone has had any experience with this or any suggestions it would be greatly appreciated. thanks, aaron bryden

[PyMOL] checkerboard stereo

2008-10-30 Thread aaron bryden
Are their any plans to improve checkerboard stereo support for 3D DLP hdtvs any time soon in the incentive builds. for more info look at: http://www.dlp.com/hdtv/3-d_dlp_hdtv.aspx thanks, aaron bryden

[PyMOL] resize to span 2 outputs on OS X

2008-08-06 Thread aaron bryden
of the opengl window. Currently in order to use pymol on our geowall, users have to maximize pymol on one window and drag it across the other screen. Is their a better solution? thanks, Aaron Bryden

Re: [PyMOL] real time editing/moving of molecular structure from scripting interface

2007-10-09 Thread aaron bryden
Thank you very much, this works much faster than cmd.alter_state. On 10/9/07, Tsjerk Wassenaar tsje...@gmail.com wrote: #--- Python proof e-mail ;) --- # Hi Aaron, # You can get to the coordinates in the following way: # First make a model from the selection you want to work on: sel =

[PyMOL] real time editing/moving of molecular structure from scripting interface

2007-10-08 Thread aaron bryden
demo and when editing the molecular structure w/ the mouse. thanks in advance, aaron bryden Phillips Lab University Of Wisconsin Madison

[PyMOL] vrml broken normals

2007-08-28 Thread aaron bryden
normals appear to be still broken in VRML export. I have attached a simple test case that demonstrates this. The pdb file attached contains 1 atom at the origin. To reproduce the wrl file that I have attached, set the quality to best performance, turn on surface rendering of the molecule and

[PyMOL] vrml export normals

2007-04-18 Thread aaron bryden
Has anyone had good luck with the VRML export. It seems that there is a problem with the normals that are exported in some cases. Can anyone recommend a VRML viewer that works well with the exported files. aaron

[PyMOL] scene export

2007-02-26 Thread aaron bryden
Does anyone know of the best way to get a scene export of all polygons currently being used? I am not afraid to modify the pymol source and have done so for other custom projects. The vrml export option is very much appreciated but exporting stick models has the unfortunate consequence that the

[PyMOL] Sequence view size

2007-01-11 Thread aaron bryden
Is their any way to get the size in pixels of the sequence view like their is of the internal gui, or the size in pixels of the space actually used for drawing? I know that glGetDouble(GL_VIEWPORT) but this doesn't take into account the internal gui or the sequence view. I can find a way to get

[PyMOL] Wall Eye stereo widgets

2005-11-14 Thread Aaron Bryden
Hey, Is their any way to make the wall eye stereo mode draw the various controls for each eye. Specifically I am talking about the panel on the right and the sequence display/selection control. Where in the code tree should I consider looking in order to add this functionality. Also does a