From: David Hall mailto:li...@cowsandmilk.net>>
Date: Sunday, May 4, 2014 8:48 AM
To: Grateful Frog mailto:gratefulf...@gmail.com>>
Cc:
"pymol-users@lists.sourceforge.net<mailto:pymol-users@lists.sourceforge.net>"
mailto:pymol-users@lists.sourceforge.net>>
Sub
nd
>>>>
>>>> and it results in no instances of diffuseColor on the same line as a
>>>> negative number in any of the output wrl files (as determined by: `grep
>>>> -e "diffuseColor.*-" *.wrl` ).
>>>>
>>>> Could you be more spe
: `grep
>>> -e "diffuseColor.*-" *.wrl` ).
>>>
>>> Could you be more specific with how you're generating the colors in
>>> your PyMOL session (perhaps with a minimal script that reproduces the
>>> problem), and/or post a bit of the output
unt
>>> of color), and results in undefined behavior. RGB colors use a number in
>>> the range 0.0-1.0 (inclusive) for each value in the tuple. What color are
>>> you using for your model before exporting VRML? Try setting everything to
>>> white (`color wh
or post a bit of the output .wrl file, showing in particular anywhere
> you see a negative color value?
>
> Thanks,
> Jared
>
> --
> Jared Sampson
> Xiangpeng Kong Lab
> NYU School of Medicine
> kong.med.nyu.edu
> --------------
> *From:* Grateful
g in particular anywhere you see a
negative color value?
Thanks,
Jared
--
Jared Sampson
Xiangpeng Kong Lab
NYU School of Medicine
kong.med.nyu.edu
From: Grateful Frog [gratefulf...@gmail.com]
Sent: Saturday, May 03, 2014 1:53 PM
To: Sampson, Jared
Cc: Marcelo Marcet;
ng Kong Lab
> NYU School of Medicine
> kong.med.nyu.edu
> --
> *From:* Grateful Frog [gratefulf...@gmail.com]
> *Sent:* Friday, May 02, 2014 7:07 PM
> *To:* Marcelo Marcet
> *Cc:* pymol-users@lists.sourceforge.net
> *Subject:* Re: [PyMOL] Pymol wrl output
&
teful Frog [gratefulf...@gmail.com]
Sent: Friday, May 02, 2014 7:07 PM
To: Marcelo Marcet
Cc: pymol-users@lists.sourceforge.net
Subject: Re: [PyMOL] Pymol wrl output
these are the errors that Shapeways sent back:
Unfortunately, the model you recently uploaded TMD11Ultra.wrl did not pass ou
these are the errors that Shapeways sent back:
Unfortunately, the model you recently uploaded TMD11Ultra.wrl did not pass
our initial printability checks, so it's not yet ready for 3D printing.
Printability Error:
- Model failed during repair. This is likely due to problems merging
shel
Hi Marcelo,
Thanks for your help and suggestion!
I did that and the surface is much nicer.
However, the Pymol rendering in VRML still won't load to Shapeways without
error.
I have to re-render in VRML in MeshLab.
My goal is to do it all in Pymol.
Any more ideas would be great!
Ciao,
Bob
On
Hi Bob,
Before you save your file from pymol try increasing the quality to max, then
save as VRML. This increases the number of polygons in the file and after
exporting from meshlab the final molecule will look a lot smoother.
Cheers,
Marcelo
On May 2, 2014, at 2:15 PM, Grateful Frog wrote:
Hi all,
I'm new to this list and to this tool. I have encountered a problem with
exporting as wrl in pylolk 1.7 that I compiled on my Ubuntu 12.04 platform.
I load a PDB file and it displays fine.
I then type the command "show surface" and this works fine, too.
I then save image as VRML 2, and
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