Hi Sampsa -
The long list of ids crashes for me as well. Instead of listing each id
separately, you can use ranges to define your selections.
select paska, id 36-58
select isopaska, id 36-350
If you need to use non-continuous ids, you can use Boolean logic to join the
ranges:
select isopaska
Hi,
I am trying to select a large number of atoms, using a pymol script.
The first script file looks like this:
---
select paska, id
36+37+38+39+40+41+42+43+44+45+46+47+48+49+50+51+52+53+54+55+56+57+58
The second one like this:
select isopaska, id
36+37+38+39+
Hi Anasuya,
"br." is short for "byres" (by residue). So just drop that from your
selection expression.
select site, (resn FAD and chain A and resi 45) around 4.5 and not HET
Cheers,
Thomas
Anasuya Dighe wrote, On 07/23/12 09:00:
> Hi Pymol-users,
>
> I need to select only the atoms [and NO
Hi Pymol-users,
I need to select only the atoms [and NOT complete amino acid residues] which are
lying in a radius of 4.5 Angstroms from the ligand from a ligand-bound protein
structure.
I am aware that the command: select site, br. resn FAD and chain A and resi 45
around 4.5 and not HETselect
I'm using PROView (I believe it's a PyMOL-enhanced tool) on a Windows 2000
machine, and was trying to pick some atoms in the structure window, but
there is no visual indication of the selection. I tried it on a WinXP, and
there were some visible pink dots showing up following my clicks. Have
ot
ut it won't take much
work...
Comments?
- Warren
> -Original Message-
> From: Ricardo Aparicio [mailto:apari...@if.sc.usp.br]
> Sent: Wednesday, March 06, 2002 6:16 AM
> To: pymol-users@lists.sourceforge.net
> Subject: [PyMOL] selecting atoms from a mask
>
>
>
Dear users,
I would like to select atoms from file.pdb which are - at the same time
- inside the volume of a map.
In other words, I would like to make to make a selection like:
select file.pdb AND map.ccp4
I would like to know what would be the correct way to do it in PyMOL.
Many thanks in ad
