Hi
how do I determine the path of the script???
the answer is sys.argv[0]
for more information see this page
http://diveintopython.org/functional_programming/finding_the_path.html
PS sorry for the mistake Jason Vertrees
--
Yerko Ignacio Escalona Balboa
Ingeniero en Biotecnología Molecular
I think you'll be saddened to discover that if you try what Petr (the
original poster) was doing, sys.argv[0] won't work.
$ cat test.py
print sys.argv[0]
$ pymol -qrc test.py
PyMOLrun test.py,main
/sw/lib/pymol-py26/modules/pymol/__init__.py
This quite clearly gives the behavior that Petr had
Hi Nick,
I noticed a few things:
- when I run supercell 2, 1, 1 I get another cell outline along the
a axis, but no atoms are shown in the second cell. Do I have to run
another command for them to show up?
the script does not create symmetry mates. The symexp command can
create symmetry
Dear Mr. Hall,
thank you very much for your help. This really works (I have tested it
now on windows).
Regards,
Petr Benes
2010/4/15 David Hall li...@cowsandmilk.net:
I think you'll be saddened to discover that if you try what Petr (the
original poster) was doing, sys.argv[0] won't work.
$
Hi all,
I've been trying to get APBS Tools and/or APBSTools2 running for a
few weeks now on multiple linux systems (RedHat and Fedora). I've
Installed MALOC and APBS Tools. I can start up Pymol through Phenix,
load a .pqr generated from a PDB2PQR server, start APBS Tools, set the
grid, but
Hi Jon,
Perhaps you could look at VASCo http://genome.tugraz.at/VASCo/
I have found it to work extremely well on Windows and Linux platforms.
You not only get electrostatics but also hydrophobic surface coloring, and
all without the APBS and Python hassles and headaches.
Sorry to be knocking
Hi
I can get the animations launched from inside powerpoint to show up
and go between my stored scenes. Is there some way to toggle on the
internal_gui display from this full screen mode.
I know the command
set internal_gui,1
But when I type it on the full screen molecule, nothing happens.
Dear pymol users,
I had to install pymol on my Macbook. I downloaded the files from
SouceForge.net. When I typed as following I got error messages:
python setup.py build install
running build
running build_py
running build_ext
building 'pymol._cmd' extension
gcc -fno-strict-aliasing
Hi,
Which version of PyMOL, APBS and PDB2PQR are you using?
If you send me a PQR file off-list, I can take a closer look at what's going
on.
Thanks,
-Michael
On Thu, Apr 15, 2010 at 12:01 AM, J. Fleming moloch...@gmail.com wrote:
Hi all,
I've been trying to get APBS Tools and/or
On Thu, Apr 15, 2010 at 10:30 AM, Shiven Shandilya
shiven.shandi...@gmail.com wrote:
Sorry to be knocking down APBS+PyMOL integration like this, but IMHO VASCo
does a stellar job as far as integrating outside programs with PyMOL goes.
I initially wrote the PyMOL/APBS plugin for my own use
Hi David,
I downloaded apbs and pdb2pqr, but I don't know how to install them on
my ubuntu 9.04. Is it possible to make an easy to install release?
For now, could you please send me the instruction.
Maia
David Hall wrote:
In my incentive build, freemol is present with the following readme:
On Thu, Apr 15, 2010 at 11:53:06AM -0600, Maia Cherney wrote:
I downloaded apbs and pdb2pqr, but I don't know how to install them on
my ubuntu 9.04. Is it possible to make an easy to install release?
For now, could you please send me the instruction.
apbs is available in Ubuntu (via Debian)
Dear Michael,
First, let me thank you for your time and effort in providing the community
with your contributions. I do sincerely appreciate your hard work and your
willingness to share it with us all. Without the contributions of users such
as yourself, PyMOL's stature and utility would be far
The error below shows that you don't have gcc, which means you have to
install Apple's Developer tools to compile pymol.
That said, the easiest way right now is probably using macports.
Follow the instructions at http://www.macports.org/install.php for
installing macports, then you can run port
forgot to also send to the list.
-- Forwarded message --
From: Nicolas Bock nicolasb...@gmail.com
Date: Thu, Apr 15, 2010 at 15:46
Subject: Re: [PyMOL] feature request: supercell construction
To: Thomas Holder spel...@users.sourceforge.net
Hi Thomas,
On Thu, Apr 15, 2010 at
PyMOLers,
A bug was brought to my attention to day in the symmetry expansion
command (try it on 2bop). If you have issues with the symexp command
in your work, please check out the hastily-written and really-slow,
but correct (for my test cases), manual symmetry expansion script:
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