[PyMOL] problem with installation of pynmr
dear all,
sorry for a maybe trivial question, but I am not able to solve this problem:
I want to install PyNMR (0.37 for linux) to my Pymol (0.99 for linux).
After installation I get the positive output:
!! PYNMR install has completed.
To run PYNMN, start up pymol, then open the NMR Extension under Plugin.
but when I open Pymol, I get:
Detected 2 CPUs. Enabled multithreaded rendering.
Exception in plugin 'pynmr' -- Traceback follows...
Traceback (most recent call last):
File /home/nmr/software/pymol/pymol/modules/pmg_tk/PMGApp.py, line 159, in
initialize_plugins
mod.__init__(self)
TypeError: module.__init__() argument 1 must be string, not instance
Error: unable to initialize plugin 'pynmr'.
Well, the plugin appears in the menu as it should, but I only get errors when I
try to load a file there, or do any other action (e. g. the 'working directory'
seems to be wrong also).
Since PyNMR seems to be used widely, I do not think that this is a problem from
the plugin but rather my fault/problem with Pymol...
During installation I get the following:
[r...@04-pm028 pynmr]# install
Running PYNMR installation script.
Checking for the Numeric (numerical python) package.
Numeric was found.
** Good. I have found your PYMOL installation at
/home/nmr/software/pymol/pymol/modules.
Install pynmr in: [/home/nmr/software/pymol/pymol/modules] {** I think, it
is right to install it into this directory **}
- installing in /home/nmr/software/pymol/pymol/modules.
running install
running build
running build_py
package init file 'pmg_tk/startup/__init__.py' not found (or not a regular file)
copying pmg_tk/startup/pynmr/Crmsd.py - build/lib/pmg_tk/startup/pynmr
copying pmg_tk/startup/pynmr/__init__.py - build/lib/pmg_tk/startup/pynmr
package init file 'pmg_tk/startup/__init__.py' not found (or not a regular file)
running install_lib
copying build/lib/pmg_tk/startup/pynmr/Crmsd.py -
/home/nmr/software/pymol/pymol/modules/pmg_tk/startup/pynmr
copying build/lib/pmg_tk/startup/pynmr/__init__.py -
/home/nmr/software/pymol/pymol/modules/pmg_tk/startup/pynmr
byte-compiling
/home/nmr/software/pymol/pymol/modules/pmg_tk/startup/pynmr/Crmsd.py to
Crmsd.pyc
byte-compiling
/home/nmr/software/pymol/pymol/modules/pmg_tk/startup/pynmr/__init__.py to
__init__.pyc
running install_data
copying pmg_tk/startup/pynmr/Crmsd.so -
/home/nmr/software/pymol/pymol/modules/pmg_tk/startup/pynmr
running install_egg_info
Removing /home/nmr/software/pymol/pymol/modules/pynmr-0.37f-py2.6.egg-info
Writing /home/nmr/software/pymol/pymol/modules/pynmr-0.37f-py2.6.egg-info
!! PYNMR install has completed.
To run PYNMN, start up pymol, then open the NMR Extension under Plugin.
[r...@04-pm028 pynmr]#
whereas __init__.py is an empty file (I don't know it that is relevant)
Any suggestions are welcome,
thank you very much,
Christoph
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RE: [PyMOL] Problem with Installation of PyMOL 0.98 on WinXP Pro SP2
Hi Brian, I had exactly the same problem while installing this version of Pymol on WinXP SP2; I could fix this problem by replacing this file from the folder c:\windows\repair to the folder c:\windows\system32. However if it doesn't work (or if the file is absent from this repair folder), you should find a file called autoexec.nt_ in the i386 folder of your installation CD; just type in a command windows: expand CD-ROM Drive Letter:\i386\autoexec.nt_ c:\windows\system32\autoexec.nt If this does not resolve your issue, visit this link: http://support.microsoft.com/default.aspx?scid=kb;en-us;324767 You might find here the answer to your question. Hope it helps :-) Cheers Greg -Original Message- From: pymol-users-ad...@lists.sourceforge.net [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of Brian A. Canada Sent: jeudi, 14. juillet 2005 22:29 To: pymol-users@lists.sourceforge.net Subject: [PyMOL] Problem with Installation of PyMOL 0.98 on WinXP Pro SP2 Hi everyone, I am trying to install PyMOL 0.98 on my machine, but when I click on SETUP.EXE, I get the following error message, in a dialog box that reads 16-bit Windows Subsystem.: C:\WINDOWS\SYSTEM32\AUTOEXEC.NT. The system file is not suitable for running MS-DOS and Microsoft Windows applications. Choose 'Close' to terminate the application. Has anyone else encountered this error? I don't understand why it should be having trouble with my system. I'm running Windows XP Professional, and I just installed Service Pack 2, and that didn't solve the problem. I've noticed that there is no AUTOEXEC.NT file in my System32 folder, which I thought was peculiar. I'm hoping that someone out there would know how I can get around this. In the meantime, I'm going to try installing the Mac version on my powerbook at home. Somehow I suspect the installation will go much smoother on that machine... Thanks in advance, Brian
[PyMOL] Problem with Installation of PyMOL 0.98 on WinXP Pro SP2
Hi everyone, I am trying to install PyMOL 0.98 on my machine, but when I click on SETUP.EXE, I get the following error message, in a dialog box that reads 16-bit Windows Subsystem.: C:\WINDOWS\SYSTEM32\AUTOEXEC.NT. The system file is not suitable for running MS-DOS and Microsoft Windows applications. Choose 'Close' to terminate the application. Has anyone else encountered this error? I don't understand why it should be having trouble with my system. I'm running Windows XP Professional, and I just installed Service Pack 2, and that didn't solve the problem. I've noticed that there is no AUTOEXEC.NT file in my System32 folder, which I thought was peculiar. I'm hoping that someone out there would know how I can get around this. In the meantime, I'm going to try installing the Mac version on my powerbook at home. Somehow I suspect the installation will go much smoother on that machine... Thanks in advance, Brian
Re: [PyMOL] problem in installation
Yes, i've had the same problem too. Jules On Mon, 5 Apr 2004, Tom Lee wrote: I have trouble installing PyMOL using pymol-0_95-bin-win32-py23.zip. Here is the message I got. The installer is unable to locate Python. Python must be installed before PyMOL. Do you wish to abort? I have Python2.3.2 installed, and there was no problem installing pymol_0.93 with this version of Python. Anyway, I reinstalled Python again, but it doesn't help. Does anyone have this problem? Tom Lee --- This SF.Net email is sponsored by: IBM Linux Tutorials Free Linux tutorial presented by Daniel Robbins, President and CEO of GenToo technologies. Learn everything from fundamentals to system administration.http://ads.osdn.com/?ad_id=1470alloc_id=3638op=click ___ PyMOL-users mailing list PyMOL-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pymol-users
[PyMOL] problem in installation
I have trouble installing PyMOL using pymol-0_95-bin-win32-py23.zip. Here is the message I got. The installer is unable to locate Python. Python must be installed before PyMOL. Do you wish to abort? I have Python2.3.2 installed, and there was no problem installing pymol_0.93 with this version of Python. Anyway, I reinstalled Python again, but it doesn't help. Does anyone have this problem? Tom Lee
