Re: [Rd] R CMD build cannot create vignettes on Windows if Makefile is used

2010-09-15 Thread Hervé Pagès
Oops, sorry for the noise but after looking at today's BioC build/check results, I realize the problem is still here. At least for some of the 8 packages that had an 'R CMD build' timeout because of the Sweave.sty file not being found. I just happened to run 'R CMD build' by hands yesterday on a

Re: [Rd] R CMD build cannot create vignettes on Windows if Makefile is used

2010-09-14 Thread Hervé Pagès
Duncan, On 09/13/2010 11:47 AM, Duncan Murdoch wrote: On 13/09/2010 2:38 PM, Hervé Pagès wrote: [...] Thanks for suggesting workarounds but don't you think there is a real problem? As I said, we don't use TEXINPUTS on Windows, we use the command line version. I didn't write the code, so I

Re: [Rd] R CMD build cannot create vignettes on Windows if Makefile is used

2010-09-14 Thread Duncan Murdoch
On 14/09/2010 2:46 PM, Hervé Pagès wrote: Duncan, On 09/13/2010 11:47 AM, Duncan Murdoch wrote: On 13/09/2010 2:38 PM, Hervé Pagès wrote: [...] Thanks for suggesting workarounds but don't you think there is a real problem? As I said, we don't use TEXINPUTS on Windows, we use the

Re: [Rd] R CMD build cannot create vignettes on Windows if Makefile is used

2010-09-13 Thread Duncan Murdoch
Hervé Pagès wrote: Hi Duncan, On 09/12/2010 05:07 AM, Duncan Murdoch wrote: On 12/09/2010 12:49 AM, Hervé Pagès wrote: Hi Duncan, On 09/11/2010 03:56 AM, Duncan Murdoch wrote: On 11/09/2010 12:52 AM, Hervé Pagès wrote: Hi, I found the following problem with recent

Re: [Rd] R CMD build cannot create vignettes on Windows if Makefile is used

2010-09-13 Thread Duncan Murdoch
On 13/09/2010 2:38 PM, Hervé Pagès wrote: On 09/13/2010 03:34 AM, Duncan Murdoch wrote: Hervé Pagès wrote: Hi Duncan, On 09/12/2010 05:07 AM, Duncan Murdoch wrote: On 12/09/2010 12:49 AM, Hervé Pagès wrote: Hi Duncan, On 09/11/2010 03:56 AM, Duncan Murdoch wrote: On 11/09/2010

Re: [Rd] R CMD build cannot create vignettes on Windows if Makefile is used

2010-09-13 Thread Hervé Pagès
On 09/13/2010 03:34 AM, Duncan Murdoch wrote: Hervé Pagès wrote: Hi Duncan, On 09/12/2010 05:07 AM, Duncan Murdoch wrote: On 12/09/2010 12:49 AM, Hervé Pagès wrote: Hi Duncan, On 09/11/2010 03:56 AM, Duncan Murdoch wrote: On 11/09/2010 12:52 AM, Hervé Pagès wrote: Hi, I found the

Re: [Rd] R CMD build cannot create vignettes on Windows if Makefile is used

2010-09-12 Thread Duncan Murdoch
On 12/09/2010 12:49 AM, Hervé Pagès wrote: Hi Duncan, On 09/11/2010 03:56 AM, Duncan Murdoch wrote: On 11/09/2010 12:52 AM, Hervé Pagès wrote: Hi, I found the following problem with recent R-devel (2010-08-26 r52817) on Windows (32-bit and 64-bit): 'R CMD build pkg' gets stalled during

Re: [Rd] R CMD build cannot create vignettes on Windows if Makefile is used

2010-09-12 Thread Wolfgang Huber
Hi Duncan wouldn't it be possible that by default the Sweave.sty in share/texmf is found by 'R CMD build' for use by package vignettes without manual intervention? AfaIcs this is also how it worked in the past. Best wishes Wolfgang On Sep/11/10 12:56 PM, Duncan Murdoch wrote: On

Re: [Rd] R CMD build cannot create vignettes on Windows if Makefile is used

2010-09-12 Thread Duncan Murdoch
On 12/09/2010 12:04 PM, Wolfgang Huber wrote: Hi Duncan wouldn't it be possible that by default the Sweave.sty in share/texmf is found by 'R CMD build' for use by package vignettes without manual intervention? Yes, it does work that way. What Hervé is talking about are cases where people

Re: [Rd] R CMD build cannot create vignettes on Windows if Makefile is used

2010-09-12 Thread Hervé Pagès
Hi Duncan, On 09/12/2010 05:07 AM, Duncan Murdoch wrote: On 12/09/2010 12:49 AM, Hervé Pagès wrote: Hi Duncan, On 09/11/2010 03:56 AM, Duncan Murdoch wrote: On 11/09/2010 12:52 AM, Hervé Pagès wrote: Hi, I found the following problem with recent R-devel (2010-08-26 r52817) on Windows

Re: [Rd] R CMD build cannot create vignettes on Windows if Makefile is used

2010-09-11 Thread Duncan Murdoch
On 11/09/2010 12:52 AM, Hervé Pagès wrote: Hi, I found the following problem with recent R-devel (2010-08-26 r52817) on Windows (32-bit and 64-bit): 'R CMD build pkg' gets stalled during vignette creation for packages that have a Makefile in pkg/inst/doc. It seems that the problem is that the

Re: [Rd] R CMD build cannot create vignettes on Windows if Makefile is used

2010-09-11 Thread Hervé Pagès
Hi Duncan, On 09/11/2010 03:56 AM, Duncan Murdoch wrote: On 11/09/2010 12:52 AM, Hervé Pagès wrote: Hi, I found the following problem with recent R-devel (2010-08-26 r52817) on Windows (32-bit and 64-bit): 'R CMD build pkg' gets stalled during vignett creation for packages that have a

[Rd] R CMD build cannot create vignettes on Windows if Makefile is used

2010-09-10 Thread Hervé Pagès
Hi, I found the following problem with recent R-devel (2010-08-26 r52817) on Windows (32-bit and 64-bit): 'R CMD build pkg' gets stalled during vignette creation for packages that have a Makefile in pkg/inst/doc. It seems that the problem is that the commands used in the Makefile for converting