Re: [Rd] Possible x11 window manager window aggregation under one icon?

On 22 March 2021 at 16:57, Dirk Eddelbuettel wrote: | | On 23 March 2021 at 00:01, Ivan Krylov wrote: | | The surrounding code and | | | | proved to be enough of an example. The following patch makes it | | possible to

Re: [Bioc-devel] Question with push to remote repository

Hi Lauren, Maybe the right key wasn’t added, you need to figure it out with Tim if you continue with this approach. Please check if the key added was correct on BiocCredentials, and on your end, please check if you are using the right key-pair. Best, Nitesh From: "Harmon, Lauren" Date:

Re: [Bioc-devel] EXTERNAL: Resolve mismatch between master and release branches

Hi Sarah, The release branch is meant for bug fixes that ensure the stability of the code. It does not usually include 'updates' from the devel. The way to cleanly do this is to hard reset to a previous commit. The commit where your packages version was bumped for the 3.12 release. You can

Re: [Rd] Possible x11 window manager window aggregation under one icon?

On 23 March 2021 at 00:01, Ivan Krylov wrote: | The surrounding code and | | proved to be enough of an example. The following patch makes it | possible to group x11() windows on my PC with Xfce running: [...] | Some

Re: [Rd] Possible x11 window manager window aggregation under one icon?

On Mon, 22 Mar 2021 15:42:04 -0400 Duncan Murdoch wrote: > I'd be happy to add something to rgl if you could point me to > an example On Mon, 22 Mar 2021 14:54:43 -0500 Dirk Eddelbuettel wrote: > Just like Duncan I see now WM_HINTS yet, so maybe by > just giving them we can improve? The

[Bioc-devel] Resolve mismatch between master and release branches

Hi, I have updated the master branch of my MEAT package yesterday ( https://github.com/sarah-voisin/MEAT), and I tried updating the release branch as well (RELEASE_3_12), but I must have messed up since the release branch is now 7 commits behind master and 3 commits ahead, and I am stuck. How do

[Bioc-devel] May 3 – May 14, 2021, online: May Institute on computation and statistics for mass spectrometry and proteomics

Dear Colleagues: May Institute on Computation and Statistics for Mass Spectrometry and Proteomics, taking place on May 3 � May 14, 2021 on the Boston campus of Northeastern University (online), is now accepting applications. The program includes tutorials and practical hands-on sessions,

Re: [Rd] Possible x11 window manager window aggregation under one icon?

(Group reply to three emails at once) On 22 March 2021 at 10:27, Balasubramanian Narasimhan wrote: | Confession: haven't done this in decades. Equally green here. | Isn't the usual way to use 'xwininfo' to figure out the information | about any X window and set a specific resource in the

Re: [Bioc-devel] Question with push to remote repository

Hi, It's possible you aren't using the correct SSH key? Why does it show t.triche as the key user? Best, Nitesh On 3/22/21, 2:28 PM, "Bioc-devel on behalf of Harmon, Lauren" wrote: Hello, I have a quick question! I accidentally committed a large file to a bioconductor

Re: [Rd] Possible x11 window manager window aggregation under one icon?

On 22/03/2021 3:32 p.m., Ivan Krylov wrote: On Sat, 20 Mar 2021 11:51:41 -0500 Dirk Eddelbuettel wrote: R plots however all have one each. Needless to say I may also have more than one plot device open... Would anyone know how we can force these to aggregate under just one? Grouping seems

Re: [Rd] Possible x11 window manager window aggregation under one icon?

On Sat, 20 Mar 2021 11:51:41 -0500 Dirk Eddelbuettel wrote: > R plots however all have one each. Needless to say I may also have > more than one plot device open... Would anyone know how we can force > these to aggregate under just one? Grouping seems to be achieved by setting the window_group

[Bioc-devel] Question with push to remote repository

Hello, I have a quick question! I accidentally committed a large file to a bioconductor repository, and I am trying to remove it from the history with bfg. That works fine, but when I try to push my changes, I get this error: lauren.harmon@C02CG5WTLVDL spiky.git % git push Enter passphrase

[Rd] R 4.0.5 scheduled for March 31

Full schedule is available on https://developer.r-project.org (or https://svn.r-project.org/R-dev-web/trunk/index.html for the impatient). (This is a fast-track release, to resolve an issue with Asian character sets and another issue with R CMD build, before R 4.1.0) -- Peter Dalgaard,

Re: [Rd] Possible x11 window manager window aggregation under one icon?

Confession: haven't done this in decades. Isn't the usual way to use 'xwininfo' to figure out the information about any X window and set a specific resource in the .X11defaults or equivalent?  Also doing the same with windows that aggregate could yield a common resource, perhaps? -Naras On

Re: [Bioc-devel] Methods to speed up R CMD Check

Hi Alan, It looks like what is slowing everything down significantly is the approach you've taken to look up the ExperimentHub resources that you control by name every time you need to access them. E.g: Look up by name: > system.time(tt_alzh <- ewceData::tt_alzh()) snapshotDate():

Re: [Bioc-devel] Methods to speed up R CMD Check

if your examples repeatedly calculate the same thing, and this is also typical of how users use your package, it might make sense to 'memoise' key functions in your package https://cran.r-project.org/package=memoise Martin On 3/22/21, 7:41 AM, "Bioc-devel on behalf of Kern, Lori" wrote:

Re: [Bioc-devel] Bioconductor Git Credentials error

Hi, You cannot have two maintainers to a package. We operate under the assumption that there is a single maintainer per package. The user that has access to the package is �j.chen2�., there are no SSH keys with that username so there is no access. I�ve deleted the other account with username

Re: [Bioc-devel] Methods to speed up R CMD Check

If your data is using ExperimentHub, it should already be caching the downloaded data. Once it is downloaded once, it should be using the cached download for subsequent calls to the hub. We will investigate to ensure that the caching mechanism is functioning properly on all of our

Re: [Bioc-devel] Bioconductor Git Credentials error

Hi Nitesh, Our account is activated already. Thank you Best Regards Raman On Sat, Mar 20, 2021 at 10:31 PM Nitesh Turaga wrote: > Did you activate your account first? > > > > > > > > *From: *raman sethi > *Date: *Friday, March 19, 2021 at 10:33 PM > *To: *Nitesh Turaga > *Cc: *Bioc-devel

[Bioc-devel] Methods to speed up R CMD Check

Hi all, I am working on the development of [EWCE](https://github.com/NathanSkene/EWCE) but have hit an issue with R CMD check's runtime. I have been informed this test needs to be completed in 15 minutes but mine is currently running in ~24 minutes and I am looking for methods to speed this

Re: [Rd] Faster sorting algorithm...

My apologies to Professor Neal. Thank you for correcting me. Best regards Morgan On Mon, 22 Mar 2021, 05:05 , wrote: > I think it is "Professor Neal" :) > > I also appreciate the pqR comparisons. > > On Wed, Mar 17, 2021 at 09:23:15AM +, Morgan Morgan wrote: > >Thank you Neal. This is