On 27 March 2010 at 13:50, Gabor Grothendieck wrote:
| The worst part is the 20 minute delay which means that if here is
| something wrong and you don't know what it is and need to try various
| things via trial and error each try takes 20 minutes so its not
| surprising that it can be extremely
On 12 April 2010 at 18:11, Sharpie wrote:
| Jeff Brown wrote:
| I'm trying to learn to use .C, which lets one invoke compiled C code from
| within R. To do that, one has to first get the C code into R as a shared
| object, which (I think) means first compiling it (with COMPILE or SHLIB)
|
interface for R, mentored by Dirk Eddelbuettel,
Chicago, USA
Felix Schoenbrodt, Social Relations Analyses in R, mentored by Stefan
Schmukle, Universitaet Muenster, Germany
Details about all proposals are on the R Wiki page for the GSoC 2010 at
http://rwiki.sciviews.org/doku.php
On 7 May 2010 at 15:23, Sklyar, Oleg (London) wrote:
| Hi all:
|
| since about a month we encountered a problem with R -e command: spaces
| in the command of R -e command are no more tolerated. This same
| issue affects 2.11 patched (05-05-2010), 2.10.1, and current devel (at
| least the one of
On 14 May 2010 at 13:52, Dave Lubbers wrote:
|
| R 2.7.2 - the manual says
| configure
| make
|
| Which is what I did. So I did read the manual and followed the directions.
| The manual is too terse to get me there.
On Debian / Ubuntu, you can also do
sudo apt-get install r-mathlib
Michael,
You are getting confused in compiler minutia when you could be concentrating
on your code. The inline package can help here.
Consider the snippet below which loads inline, defines your function body
sans headers etc and then uses the magic of inline to compile, link and load
your
Eduardo,
On 10 July 2010 at 19:31, Eduardo García wrote:
| Hi everybody! Could somebody help me with the following?
|
| I'm trying to run a simple Hello World code in openmp using .C function. The
| C code i have is:
|
| #include omp.h
| #include stdio.h
| #include R.h
|
| void
On 10 July 2010 at 13:01, Dirk Eddelbuettel wrote:
|
| Eduardo,
|
| On 10 July 2010 at 19:31, Eduardo García wrote:
| | Hi everybody! Could somebody help me with the following?
| |
| | I'm trying to run a simple Hello World code in openmp using .C function. The
| | C code i have
users of my program.
|
|
| Dirk Eddelbuettel love R/C++ combination. Rinside could be usefull for you.
|
| http://dirk.eddelbuettel.com/code.html
Thanks for the plug. We can definitely embed R inside C++ on operating
systems containing an x somewhere in their name. But note that the RInside
page
On 19 August 2010 at 17:06, Vyacheslav Karamov wrote:
| Dirk Eddelbuettel пишет:
| On 19 August 2010 at 13:02, Daniel Cegiełka wrote:
| | Is there any posibility to use R without installing?
| |
| | I mean that I have my own application written in MS Visual C++ and I
need
| | to use R
as I am concerned a
good thing as well.
Dirk
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technologies are meant to hide R or
permit deployment without it.
Dirk
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the
running of 'R CMD check' and friends.
Dirk
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On 25 August 2010 at 08:06, Prof Brian Ripley wrote:
| On Tue, 24 Aug 2010, Dirk Eddelbuettel wrote:
|
|
| On 24 August 2010 at 15:40, Hadley Wickham wrote:
| | Hi all,
| |
| | If a package suggests another package in its description, you can
| | check it at runtime with requires. How do
/cygwin/
Those links may by now be stale.
Hth, Dirk
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]
if (!file.exists(filename)) q()
con - file(filename, rb)
bin - readBin(con, raw(), 10)
bin - bin[ which(bin != 0d) ]
close(con)
Sys.sleep(1)
con - file(filename, wb)
writeBin(bin, con)
close(con)
Maybe you can use something like this and have the generated file transformed.
Dirk
--
Dirk
. With 4.2 you should be fine.
Dirk
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could do the same for gcc and strip out major version (4) and minor (0
or
| 1) and then complain. With 4.2 you should be fine.
|
| Dirk
|
| --
| Dirk Eddelbuettel | e...@debian.org | http://dirk.eddelbuettel.com
|
| __
| R-devel@r-project.org
the file filtered at the
compile stage.
Dirk
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a directory build/ inside of my
package sources.
It is still present with the RC tarball wrapped up last night (r53227).
Dirk
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On 8 October 2010 at 15:11, Martin Morgan wrote:
| On 10/08/2010 01:25 PM, Dirk Eddelbuettel wrote:
|
| With several versions of R 2.12.0 I have been seeing this when running
|
|R CMD build Rcpp
|
| from the SVN sources:
|
|[...]
|Transcript written on Rd2.log.
|Saving
in favour of data/ over inst/data.
Hth, Dirk
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over to rcpp-devel is you have questions about the Rcpp and
inline parts.
Dirk
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Burns
|
|
|
| --
| R. R. Burns
| Physicist (Retired)
| Oceanside, CA
|
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. Dirk and Romain are also churning out the
| documentation, so there are lots of examples to learn from.
Thanks for the plug and endorsement -- we appreciate it. One correction
though: We strive to provide seamless C++ and R integration, not C and R.
Dirk
--
Dirk Eddelbuettel | e...@debian.org
as file or over sockets and so.
And Yoda still rules.
Dirk
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which contains MySQL
| database development files and headers. Then, I attempted to install the
| RMySQL package again, and there was no error.
What was wrong with
sudo apt-get install r-cran-rmysql
that make you compile locally?
Dirk
--
Dirk Eddelbuettel | e...@debian.org | http
was then Rcpp. The code changed a lot, but there
is still some pride to be had in an idea living on, even if (as Peter wrote)
someone else picks up your ball and runs with it.
Regards, Dirk
[1] http://cran.r-project.org/src/contrib/Archive/cxxPack/Ancestry/?C=M;O=A
--
Dirk Eddelbuettel | e
://dirk.eddelbuettel.com/code/rcpp.changelog.html) clearly
shows that by November 2009 we were nine releases into it. There are a full
210 lines of changes including
2009-11-18 Dirk Eddelbuettel e...@debian.org
* DESCRIPTION: Add Dominick back into Authors per his new request
reversing
.
Dirk
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(to the more liberal BSD license permitting
redistribution). With some luck we will GotoBLAS2 deb packages in future
Debian and Ubuntu releases.
Hth, Dirk
--
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use
~/.R/Makevars
where you can set all variables your in in
$RHOME/etc/Makeconf
Setting the as environment variables will also work by virtue of make (and
that is what the inline package does).
Dirk
--
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,
|
| driver - dbDriver(PostgreSQL)
| con - dbConnect(driver, dbname=demo, host=192.168.8.1,
| user=postgres, password=postgres, port=5432)
|
|
| __
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| https://stat.ethz.ch/mailman/listinfo/r-devel
--
Dirk
for.
Exactly when that time is depends on a great many things and you have not
mentioned a single metric in your question. So I'd start with John's book.
Hope this helps, Dirk
--
Dirk Eddelbuettel | e...@debian.org | http://dirk.eddelbuettel.com
__
R
)
fx()
That's self-contained example for inline, using the rgamma sugar function.
You need the Rcpp:: prefix or a 'using namespace Rcpp;' when you use that in
your own source code.
Dirk
--
Dirk Eddelbuettel | e...@debian.org | http://dirk.eddelbuettel.com
On 21 January 2011 at 11:32, Xiaochun Sun wrote:
| Many thanks for your reply. Rf_rnorm works very good with me.
Glad to hear it helped, and let us know if you have other questions.
Cheers, Dirk
--
Dirk Eddelbuettel | e...@debian.org | http://dirk.eddelbuettel.com
; myRlist;
Rcpp::List reslist = R.parseEval(r_code);
show(reslist);
exit(0);
}
-
--
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-project.org mailing list
| https://stat.ethz.ch/mailman/listinfo/r-devel
|
|
|
| __
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this helps, Dirk
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On 16 February 2011 at 08:00, Dirk Eddelbuettel wrote:
| Hoping that it is nothing to permanent, could someone with the power to do so
| please give the r-forge machine (or something in the network controlling
| access to it) a good shake or reboot ?
That appears to have been temporary. http
will be appreciated. You'd have
to sign up there to post.
Thanks, Dirk
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and further questions should you have any.
Cheers, Dirk
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On 20 February 2011 at 09:50, Dirk Eddelbuettel wrote:
| There is of course merit in working through the barebones API but in case you
| would consider a higher-level alternative, consider these few lines based on
| RcppArmadillo (which end up calling dgemm() for you via R's linkage to the
BLAS
use tools::texi2dvi() :
ifneq (,$(findstring edd,$(whoami)))
pdflatex Rcpp-modules.tex
pdflatex Rcpp-modules.tex
else
$(RSCRIPT) -e tools::texi2dvi( 'Rcpp-modules.tex', pdf = TRUE, clean =
TRUE )
endif
Hth, Dirk
--
Dirk Eddelbuettel | e...@debian.org | http
and finalizer
functions. But I think that would send you into somewhat uncharted territory,
so you probably want to do read Section 8.1 (8.1 Embedding R under
Unix-alikes) of Writing R Extension carefully. Best bet may still be to
avoid the segfault alltogether if you can.
Hope this helps, Dirk
--
Dirk
etc use is discussed in Appendix A.3 Linear algebra of the R
Installation and Administration manual.
Dirk
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);
+ SET_STRING_ELT(ans, i, mkChar(tmp1));
+ } else {
+ SET_STRING_ELT(ans, i, mkChar(tm));
+ }
if(tm) free(tm);
}
UNPROTECT(1);
--
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Road, +44 1865 272866 (PA)
| Oxford OX1 3TG, UKFax: +44 1865 272595
|
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on the standard R parser but
organizing the information differently
which strikes me as close enough to what you describe. That said, Romain did
this for highlight so it may not be relevant.
Dirk
--
Dirk Eddelbuettel | e...@debian.org | http://dirk.eddelbuettel.com
this is now
checked for.
Warnings are your friends. And, just like good friends, they sometimes go in
misterious ways...
Dirk
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also be a start.
Hth, Dirk
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maybe you should revisit the Cairo devices---they allow you
plotting without an x11 device (and also give you SVG).
Dirk
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, Dirk
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On 21 April 2011 at 09:51, Karl-Dieter Crisman wrote:
| Thanks for your replies, Dirk and Matt.
My pleasure.
| On Thu, Apr 21, 2011 at 7:49 AM, Dirk Eddelbuettel e...@debian.org wrote:
| Random guess: did you connect via ssh without x11 forwarding?
|
| Almost certainly, yes. (I am
On 2 May 2011 at 11:32, Sharpie wrote:
| Hello, I was just tweaking the R build for the Homebrew package manager and I
| thought it would be nice to enable bash completion. I noticed that
| Debian-based systems install `/etc/bash_completion.d/R` but could not find a
| source for this file in the
On 3 May 2011 at 13:19, peter dalgaard wrote:
|
| On May 3, 2011, at 12:35 , Andreas Borg wrote:
|
| Hi all,
|
| I am posting this again because I got no reply on r-help. Maybe the
devel-list is the right place for this kind of question.
|
| Actually, not an R problem at all, but try one
On 6 May 2011 at 14:21, Sean Robert McGuffee wrote:
| Hi,
|
| Sorry, I just tried posting this but I had it in the wrong format of text,
| so this is a cleared format repost:
|
| I¹m trying to call some of my c++ code from R and seem to be having an issue
| with streams, although that¹s just
Sören and Carlo,
On 6 May 2011 at 19:24, soeren.vo...@uzh.ch wrote:
| Hello
|
| We have a C++ class with several methods that manipulate an object. How is
| it possible to create several instances of that class *from R* in the C++
| realm, which can then be accessed via a given name character?
:
|
| On 2011-05-06, at 11:41 AM, Dirk Eddelbuettel wrote:
|
| | I’m trying to call some of my c++ code from R and seem to be having an
| issue
| | with streams, although that’s just one obvious sign of something
different
| | in performance between calling the same function from main in c++ vs
Just noticed this in R 2.13.0, it is also still present in R-devel in SVN:
%%% Rd.sty ... Style for printing the R manual
%%% Part of the R package, http://www.R-project.org
%%% Copyright (C) 2003-20010 The R Foundation
^
Very forward-looking ...
Dirk
--
On 10 June 2011 at 15:10, Simon Urbanek wrote:
|
| On Jun 10, 2011, at 2:54 PM, Nipesh Bajaj wrote:
|
| Dear all, it is my first post in R-devel list, and hope that this is
| the right place to ask question related to package development.
|
| I have created my first package in Windows
On 10 June 2011 at 16:04, Simon Urbanek wrote:
| On Jun 10, 2011, at 3:36 PM, Dirk Eddelbuettel wrote:
| | That said, you can simply use cat() in .First.lib (if your packages has
no namespace) or .onAttach or .onLoad (if your packages has a namespace).
|
| No, not cat() --- please use
On 16 June 2011 at 18:47, Mike Sonsini wrote:
| Hello,
|
| I am very new to R but my question is with respect to the C API for
| working with an embedded R console. I have been able to start and stop
| an embedded R console from within a C program as well as use the API to
| execute commands
On 21 June 2011 at 09:50, Douglas Bates wrote:
| Questions like this would get a faster response on the Rcpp-devel list, to
| which I am copying this reply.
Quite right. Dropping r-devel now. You need to subscribe to rcpp-devel if
you want to post there.
| On Jun 21, 2011 6:35 AM, oyvfos
On 29 June 2011 at 14:17, Simon Urbanek wrote:
| BTW: the build result is at
|
|
http://www.r-project.org/nosvn/R.check/r-release-macosx-ix86/GUTS-00install.html
|
| so you may want to have a look. I'm not a C++ expert so you may want to ask
on the Rcpp list since it appears to be some issue
On 20 July 2011 at 18:02, peter dalgaard wrote:
|
| On Jul 20, 2011, at 15:38 , Dirk Eddelbuettel wrote:
|
|
| On 20 July 2011 at 14:03, Jeroen Ooms wrote:
| | I think Bill Dunlap's answer addressed it: the claim appears to be
false.
| |
| | Here is another example where
I was about to show the Rcpp build check results to a user when I noticed
that the relevant URL
http://cran.r-project.org/web/checks/check_results_Rcpp.html
currently yields a 404 error.
Spot checking for other package yields the same. Looking at
http://cran.r-project.org/web/
shows
On 5 August 2011 at 00:15, Michael Lachmann wrote:
| I'm not sure it's really worth bothering with such optimizations, on my
machine I get
|
| No it isn't worth it, you're right. Though 100MB is much smaller than my
average file size. But you're right, readChar is quite efficient.
When you
Hi Vinh,
On 9 August 2011 at 16:40, Vinh Nguyen wrote:
| Dear R-Devel,
|
| I'm using Ubuntu on an x86_64 machine and would like to have both the
| 32-bit and 64-bit versions of R built from source. By default,
| following the usual build procedures yields 64 bit R. Looking at
|
On 9 August 2011 at 21:24, Simon Urbanek wrote:
|
| On Aug 9, 2011, at 8:12 PM, Dirk Eddelbuettel wrote:
|
|
| Hi Vinh,
|
| On 9 August 2011 at 16:40, Vinh Nguyen wrote:
| | Dear R-Devel,
| |
| | I'm using Ubuntu on an x86_64 machine and would like to have both the
| | 32-bit and 64
On 16 August 2011 at 23:17, Jonathan Malmaud wrote:
| Hi,
| My R package has files in the 'inst' directory that it needs to reference.
How can the R scripts in my package find out the full path to the 'inst'
directory after the package is installed, given that different users may have
On 30 August 2011 at 02:25, Ilana Lichtenstein wrote:
| The tutorials on the web regarding creation of C++ dlls do not discuss
| linking to libraries.
Well, there are working examples among the 3200+ CRAN packages...
| Thus my two questions are:
| (1) Does anyone know how to compile a C++
On 9 September 2011 at 11:38, Paul Johnson wrote:
| Hi,
|
| I'm asking another one of those questions that would be obvious if I
| could watch your work while you do it.
|
| I'm having trouble understanding the workflow of code and package maintenance.
|
| Stage 1. Make some R functions in a
Hola,
On 9 September 2011 at 16:07, Michael King wrote:
| Hello,
|
| I have recently been doing some research regarding how to successfully save
| and load Rcpp Objects ( objects from modules ) for future use, but with
| little success. For example, to use the example package (from package
|
On 14 September 2011 at 16:22, Simon Urbanek wrote:
|
| On Sep 14, 2011, at 4:15 PM, Brian Oney wrote:
|
| Hi there,
| new idea (at 10 at night). All the emails keep me thinking (btw thanks for
all the feedback).
| What does this do on linux?
|
| getOption(pdfviewer)
| ### I got this
On 14 September 2011 at 16:56, Simon Urbanek wrote:
|
| On Sep 14, 2011, at 4:44 PM, Dirk Eddelbuettel wrote:
|
|
| On 14 September 2011 at 16:22, Simon Urbanek wrote:
| |
| | On Sep 14, 2011, at 4:15 PM, Brian Oney wrote:
| |
| | Hi there,
| | new idea (at 10 at night). All
On 20 September 2011 at 10:26, Alireza Mahani wrote:
| I have a function in R that takes another function as argument:
|
| f - function(g, ...) { #g is expected to be a function
| }
|
| I want to see if there is a way to implement f in C and calling it from R
| using .C interface. I know that I
On 23 September 2011 at 18:03, Ben Bolker wrote:
| Just to save someone else a few seconds of googling: when you try to R
| CMD check with recent versions of R-devel and you get
|
| * checking PDF version of manual ... WARNING
| LaTeX errors when creating PDF version.
| This typically
[ Cool how nobody cared about Fritz' request not to post ideas yet :) ]
[ I broadly share Oleg's wouldn't it be nice to have better plot devices
wish. But I don't think it is a three-month summer target, and it's not
on the side of things Fritz / Manuel prefer as it is infrastructure
On 20 February 2009 at 12:06, Friedrich Leisch wrote:
| On Thu, 19 Feb 2009 10:52:19 -0600,
| Dirk Eddelbuettel (DE) wrote:
|
|[ Cool how nobody cared about Fritz' request not to post ideas yet :) ]
|
| Well, I kind of expected that ;-)
|
| See also below.
|
|[ I broadly share
RQuantLib -- Bridging R and QuantLib
Mentor: Dirk Eddelbuettel
Summary: The goal of this Summer of Code project is to
a) extend the coverage of QuantLib [1] code available to R by adding more
wrapper functions to RQuantLib [2], and to
b) provide additional functionality
Stavros,
Two really quick comments:
a) you need to enable sub-second print formats
b) AFAIK pre-epoch times are second-class citizens
R options(digits.secs=6) ## print with 6 digits for microseconds
R t0 - as.POSIXct('1974-01-05 23:59:59.1')
R t0
[1] 1974-01-05 23:59:59.1 CST
R
Joerg Jaspert, one of the ftpmasters / archive maintainers within Debian,
today posted a new list of 'Sections' to debian-devel-announce (see eg here
http://www.nabble.com/forum/ViewPost.jtp?post=22524830framed=y )
This now includes a new Section:
gnu-rEverything about
On 18 March 2009 at 09:56, hadley wickham wrote:
| On Wed, Mar 18, 2009 at 9:11 AM, Ted Byers r.ted.by...@gmail.com wrote:
| 1) What multicore package? I didn't know there was one, and would be
| interested in seeing what it does.
|
| http://tinyurl.com/cudqqf
|
| ;)
Readers of the
On 31 March 2009 at 12:58, Duncan Murdoch wrote:
| On 3/31/2009 10:41 AM, Peter Ruckdeschel wrote:
| Could we have one (or maybe more) standardized optional tag(s)
| for package DESCRIPTION files to cover svn revision info?
| This would be very useful for bug reporting...
Indeed. I am doing
Per https://buildd.debian.org/build.php?pkg=r-base, we see the Alpha platform
having trouble with deriv.c :
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H
-mieee-with-inexact -fpic -std=gnu99 -O3 -pipe -g -c deriv.c -o deriv.o
deriv.c: In function 'simplify':
On 4 April 2009 at 23:21, Peter Dalgaard wrote:
| Dirk Eddelbuettel wrote:
| Per https://buildd.debian.org/build.php?pkg=r-base, we see the Alpha
platform
| having trouble with deriv.c :
|
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H
-mieee-with-inexact -fpic
On 4 April 2009 at 16:34, Dirk Eddelbuettel wrote:
| On 4 April 2009 at 23:21, Peter Dalgaard wrote:
| | Dirk Eddelbuettel wrote:
| | Per https://buildd.debian.org/build.php?pkg=r-base, we see the Alpha
platform
| | having trouble with deriv.c :
| |
| | gcc -I. -I../../src/include -I
Harry,
On 14 April 2009 at 18:24, Harry Southworth wrote:
| I'm using Ubuntu 8.10 (Intrepid Ibex) and R 2.7.1.
^^^
[ You can also get R 2.8.1 for free, see the R FAQ and search Ubuntu, or go
directly to http://cran.r-project.org/bin/linux/ubuntu
On 17 April 2009 at 09:05, Duncan Murdoch wrote:
| That would be a waste of time. People don't use the package
| documentation schemes that are in place; why would they use a new one?
Because of scattered documentation and lack of best practices? Many things
are possible with R and packages,
Salut Romain,
On 17 April 2009 at 16:36, Romain Francois wrote:
| I agree with the usefulness of having this available, but there is
| absolutely no way people are going to log such information in a
| systematic fashion. In the other hand, if you have version 1 and version
There is: you
On 17 April 2009 at 10:36, Duncan Murdoch wrote:
| I think it would have to do more than that to be useful. It would need
| to warn about a lack of an entry for the current version. Otherwise
| package.skeleton would create a blank one, and that would satisfy the
| check from then on.
|
|
(Subject: renamed as thread hijacked from the ParallelR thread --Dirk)
On 23 April 2009 at 14:44, Gabor Grothendieck wrote:
| Aside from R there are the add-on packages.
|
| A frequency table showing the licenses of the CRAN packages indicates
| that the all or almost all packages have some
On 23 April 2009 at 15:32, Gabor Grothendieck wrote:
| On Thu, Apr 23, 2009 at 3:08 PM, Dirk Eddelbuettel e...@debian.org wrote:
|
| (Subject: renamed as thread hijacked from the ParallelR thread --Dirk)
|
| On 23 April 2009 at 14:44, Gabor Grothendieck wrote:
| | Aside from R
On 23 April 2009 at 15:35, Marc Schwartz wrote:
| There is a list of acceptable entries that are defined as part of the
| specs in R-exts (see page 4). Perhaps this needs to be tightened a
| bit, at least in so far as packages passing R CMD check for the
| purpose of inclusion on CRAN. That
On 23 April 2009 at 16:35, Gabor Grothendieck wrote:
| Of the 31 packages listed:
| [1] BARD BayesDA CoCo ConvCalendar
| [5] FAiR PTAk RScaLAPACKRcsdp
| [9] SDDA SGP alphahull ash
| [13] asypowcaMassClass gpclib
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