> >>>>>> Jinsong Zhao
> >>>>>> on Tue, 13 Dec 2022 17:07:00 +0800 writes:
> > > I don
> >
> > > On 2022/12/13 10:13, Derek Ogle wrote:
> > >> bgroup() from plotmath does not render properly for
&g
bgroup() from plotmath does not render properly for me. For example
plot(0,xlim=c(0,1),ylim=c(0,1))
text(0.3,0.5,expression(bgroup('(',atop(x,y),')')))
text(0.7,0.5,expression(group('(',atop(x,y),')')))
and
library(ggplot2)
ggplot(mtcars, aes(wt, mpg)) +
annotate("text", x=2.5, y=25,
Martin,
However after some testing.
I totally agree that CMYK handling in R using pdf(..., colormodel = "cmyk")
is not correct.
Looking at the source code of the function PostScriptSetCol
in file src/librarygrDevices/src/devPS.c
the conversion to CMYK looks correct.
Looking at the generated
Martin,
However after some testing.
I totally agree that CMYK handling in R using pdf(..., colormodel = "cmyk")
is not correct.
I thought the issue may be OS specific, but I get similar behavior on a Mac.
I have discovered the Cyan tool: http://cyan.fxarena.net/
and will try it out.
As
Martin,
Have you tried printed a few pages in CMYK?
A monitor is based on mixing light using Red-Green-Blue. So it is not
possible for the monitor to show
CMYK which must be printed on paper to view correctly.
Yes, I have printed some 'CMYK' pages.
The blue is very obviously not cyan, as
, as compared to printing the
RGB version.
--
Derek M. Jones Evidence-based software engineering
tel: +44 (0)1252 520667 blog:shape-of-code.coding-guidelines.com
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All,
I used the very useful colorspace package for the plots in my book
(pdf available here): http://knosof.co.uk/ESEUR/
The color makes the plots look great, on screen.
To get lots printed, the printer requires converting the images to use cmyk
(a common requirement for larger printers, I'm
I agree with, support, and appreciate this message. Thank you Ryan for the
courage to write this, and Lainey for your courage to persist with your
question.
-Original Message-
From: R-help On Behalf Of Ryan Novosielski
Sent: Tuesday, November 17, 2020 9:40 AM
To: r-help mailing list
I am developing an application that opens an image in a new window using, at
times, windows(). I don't want the user to be able to resize the window (and
distort the image). The new window contains a menu item called "resize" that
contains three options - "R mode", "Fit to window", and "Fixed
the expression is being
evaluated, which I can understand.
I feel certain that what I want to accomplish can be done programmatically, but
am at a loss as to just how to do that.
Chances are this has been covered before. If so, apologies.
If not, can anyone point me to references with more info
Hi,
I am new to linux so please bear with me.
OS is CentOS 5.9 - This cannot be changed
I am following a guide given to me to setup a server.
I am told to do the following:
To Install R:
sudo yum install gcc
sudo yum install make
sudo yum install telnet
sudo rpm -Uvh
version of gplots will work with version 2.15.2 from the archive at
http://cran.r-project.org/src/contrib/Archive/gplots/
On 13 June 2013 03:19, Prof Brian Ripley rip...@stats.ox.ac.uk wrote:
On 13/06/2013 05:09, Derek Serianni wrote:
Hi,
I am new to linux so please bear with me.
OS is CentOS
Hi José
Yes indeed that does help.
Thanks,
Derek
On 2/7/2013 5:01 AM, Jose Iparraguirre wrote:
Hi, Derek,
Try and modify the value for the overlap argument.
Hope this helps,
José
-Original Message-
From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On
Behalf
=red,cex=1.5,given.values=given.depth)|
The resulting plot however has has bars in the conditional variable that
don't cover all of the values of x and y at x=4, 7=14, and z=134
Thanks,
Derek
attachment: Rplot.png__
R-help@r-project.org mailing list
including outlier removal from a few of the variables, which has made the
plot better, however it still is too cluttered to read the variable names.
Is there any further improvment that can be made to the attached plot and
if so what steps should I take?
Thanks,
Derek
I have successfully used the digitize package for this purpose ...
http://cran.r-project.org/web/packages/digitize/index.html
cpolw...@wittongilbert.free-online.co.uk wrote:
I want to take some published graphs and digitise them to allow me to
run some analysis on them.
Is this possible
Dear R,
I have this script which from my data points creates smoothed plot:
require(graphics)
require(stats)
A=read.table(some.txt,header =FALSE,sep = , dec = ,,fileEncoding = ,
encoding = unknown, skip=18,nrows=400)
attach(A)
plot(A$V1, A$V2,col=white)
lines(smooth.spline(A$V1,
Dear R,
Here is a code:
z=c(1,3,0.5,6,8,10,2,2,3,4,7,3)
z[z2]
I dont want print the elements, but theirs placings in vector.
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Yes, thank you.
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Richard,
that way I will have to write functions manually and that is not possible
for large number of functions.
derek
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Still I haven't had any luck yet.
How about defining new function and its domain, is it somehow possible?
Like this:
a-function(x) x beolongs to natural numbers 0,100
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Thats not exactly what I hoped for. But for now it has to suffice. More
transparent syntax would be nicer.
Exactly what I would like to do is:
for (i in 1:9){
f[i]-function(x){
a*x+b)
}
curve(f[i], 0, 8)
sol[i]-uniroot(f[i],c(0, 8))$root
points(sol[i],0,pch=16,cex=1,col=red)
}
Perhaps is
Dear R,
When I'm writing script I probably hit accidently some hot key and then the
text in script is being overwritten
by subsequent typing. Please what is the hot key or how can I disable it?
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Thank you very much. It was the Insert key. It was very annoying. Actually is
this owerwrite function of any use?
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Hello R,
I would like to plot continuos function (e.g. y=x^2) without creating a
sequence for x.
Is there a possibility to somehow specify the range - x belongs to
-100,100?
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Nice. Thank you
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Hello R,
I would like to find out how to generate array full of functions. I tried it
like this:
fv=array(,dim=c(1,10))
V=c(1:10)
for (i in 1:10){
fv[i]-function(x)(V[i]-b*a*x) # b, x are constants.
}
But it returns:
incompatible types (from closure to logical) in subassignment type fix
--
Is there a function similar to pkgDepends() that returns the packages that a
particular package imports or imports from? I believe I can get this
information from the matrix returned from installed.packages() but something
like pkgDepends() would be more convenient.
I did not find anything
Exuse me, I don't claim R^2 can't be negative. What I say if I get R^2
negative then the data are useless.
I know, that what Thomas said is true in general case. But in my special
case of data, using nonzero intercept is nonsense, and to get R^2 less than
0.985 is considered poor job (standard
Thank you for your very comprehensible answer.
I a priori know that model y=a*x+0 is right and that I can't get x=constant
nor y=constant.
I'm comparing performance of data gathering in my data set to another data
sets in which performance gathering is characterized by R-squared . The data
in
Yes they are. I had edited the reply, but It didn't help.
Correction:
2)I meant zero slope, no zero intercept.
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Thats exactly what I would like to do. Any idea on good text? I've consulted
severel texts, but no one defined R^2 as R^2 = 1 - Sum(R[i]^2) /
Sum((y[i])^2-y*)) still less why to use different formulas for similar model
or why should be R^2 closer to 1 when y=a*x+0 than in general model y=a*x+b.
Thank you for our reply. It's a pity, that 2 variables defined by different
formula have same name. If the variables had been named differently, I
wouldn't have problem at all and it looks like it's done on purpose.
Because I test a quality of data (performance of collecting data) not a
model
I know I can add line to graph with abline(), but I would like to print
R-squared, F-test value, Residuals and other statistics from lm() to a
graph. I don't know how to access the values from summary(), so that I can
use them in a following code or print them in a graph.
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Thank you that is very helpful.
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k=lm(y~x)
summary(k)
returns R^2=0.9994
lm(y~x) is supposed to find coef. a anb b in y=a*x+b
l=lm(y~x+0)
summary(l)
returns R^2=0.9998
lm(y~x+0) is supposed to find coef. a in y=a*x+b while setting b=0
The question is why do I get better R^2, when it should be otherwise?
Im sorry to use the
It states summary.lm:
r.squared R^2, the ‘fraction of variance explained by the model’,
R^2 = 1 - Sum(R[i]^2) / Sum((y[i]- y*)^2),
where y* is the mean of y[i] if there is an intercept and zero otherwise.
Why to use different formula when intercept is set to zero?
I tried to compute R^2
1) In my very humble opinion R^2 can't be negative, at least for data for
which it sound to use linear model.
Or the data would have to be utterly wrong to fit them with linear model.
2) I don't want to fit data with linear model of zero intercept.
3) I dont know if I understand correctly. Im
Hello R,
I have data in txt file of n columns like this:
x y1 .yn
1 100
2 50
3 10
4 200
5 20
I need to find coordinates for each maxima e.g.: [x,y1],[x,y2]...[x,yn]
a=read.table()
attach(a)
b=y1-x
max(b) returns only value of y but no corresponding x value
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It occured to me:
x[max(y)] simple isn't it?
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I must have mixed it up. Thank you.
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Hello R,
I would like to print regression data in graph. I mean the output from:
k=lm(formula,data)
summary(k)
Or somehow extract and print only coefficients and R-squared.
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Nice, thank you.
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Hello R,
I would like make single pdf file in which the the pages are are of mixed
format.
Manual states this code (down). The problem is the second {} overwrites
the first {}, but I want to append them.
require(graphics)
require(stats)
HBA=read.table(file.txt,header =FALSE,sep = , dec =
Hello R users, Im having this strange problem.
http://r.789695.n4.nabble.com/file/n3350024/bad2.png
I have txt file of this format (X.X, Y.Y - random numbers, ...) with data
points:
nm A nm A nm A
X.X Y.Y X.X XX X.X
X.X Y.Y Y.Y Y.Y Y.Y
My script looks like this:
require(graphics)
Solution:
main=HMF - main=HMF
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Hello R
I can not figure out, how to add text string or number to lines like on this
image:
http://r.789695.n4.nabble.com/file/n3350452/graph.png
I have some data series in text file.
My script:
require(graphics)
require(stats)
graf=read.table(file,header =FALSE,sep = , dec = ,,fileEncoding = ,
Thank you for reply. I think, in script you posted, I have to manually add
coordinates for label. I don't want do it manually. I would like to add
labels at the points, where the lines are maximally separated. (points of
maximum separation). Graphic representation of my data looks very similar to
Problem solved:
require(graphics)
require(stats)
require(hmisc)
HBA=read.table(file,header =FALSE,sep = , dec = ,,fileEncoding = ,
encoding = unknown, skip=60,nrows=210)
attach(HBA)
labcurve( list( One= list( V1,V2), Two= list( V3,V4),
Three=list( V5,V6), Four= list( V7,V8), Five= list(
packages
that implement it)? Any other recommendations? (NB: just discovered the bayesm
package. Don't know if this will work for me or not.)
Any help would be greatly appreciated.
Derek Janszen, PhD
Sr Research Biostatistician
Computational Biology Bioinformatics
Pacific Northwest National Laboratory
)
Error: cannot allocate vector of size 3.7 Gb
I don't understand how this operation violates the limits detailed in
the Memory-limit help (above).
Thank you!
Derek Eder
-
version
Mike,
Without completely knowing your end game with these questions and this
procedure it does seem like you are re-inventing the wheel here. If that is
true and given the nls() fit that you are using I would suggest that you look
at boot.case() in the alr3 package or nlsBoot() in the
I have a list that looks like this ...
have - list(a=7,b=3,c=1)
have
$a
[1] 7
$b
[1] 3
$c
[1] 1
and I want to have a simple way to change it to the following without re-typing
the values ...
desire - list(a=c(7,7),b=c(3,3),c=c(1,1))
desire
$a
[1] 7 7
$b
[1] 3 3
$c
[1] 1 1
In other
(1,1,2))
$a
[1] 7
$b
[1] 3
$c
[1] 1 1
From: Dennis Murphy [mailto:djmu...@gmail.com]
Sent: Saturday, September 18, 2010 8:25 PM
To: Derek Ogle
Cc: R (r-help@R-project.org)
Subject: Re: [R] Repeating values in a list
Hi:
How about
have - list(a=7,b=3,c=1)
lapply(have, rep, 2)
$a
[1] 7 7
$b
) Statistics of
particle size data. Appl. Statist., 41, 127–146.
Hadley
On Sunday, August 29, 2010, Joshua Wileyjwiley.ps...@gmail.com wrote:
Hi Derek,
Here is an option using the package ggplot2:
library(ggplot2)
x- sample(x = 10:50, size = 50, replace = TRUE)
qplot(x = x, geom = histogram
job of highlighting the peaks.
It may be useful for your purposes, but that doesn't necessarily make
it a meaningful graphic.
Doesn't being useful for my purpose make it meaningful, at least for me
and I hope my readers?
--
Derek M. Jones tel: +44 (0) 1252 520 667
/software/grap/
with the numbers being extracted and processed by various C programs and
awk scripts.
--
Derek M. Jones tel: +44 (0) 1252 520 667
Knowledge Software Ltd mailto:de...@knosof.co.uk
Source code analysis http://www.knosof.co.uk
All,
I have been trying to get calls to hist(...) to be plotted
with the y-axis having a log scale.
I have tried: par(ylog=TRUE)
I have also looked at the histogram package.
Suggestions welcome.
--
Derek M. Jones tel: +44 (0) 1252 520 667
Knowledge Software Ltd
Have a look at lmList() in the nlme package.
-Original Message-
From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-
project.org] On Behalf Of JesperHybel
Sent: Friday, August 13, 2010 7:56 AM
To: r-help@r-project.org
Subject: Re: [R] Linear regression on several groups
Patrick,
See all(). For example,
all(c(1,2,3)==c(1,2,3))
[1] TRUE
all(c(1,2,3)==c(2,1,3))
[1] FALSE
-Original Message-
From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-
project.org] On Behalf Of Downey, Patrick
Sent: Friday, August 13, 2010 1:49 PM
To:
Gabor ... that worked perfectly. Thank you.
-Original Message-
From: Gabor Grothendieck [mailto:ggrothendi...@gmail.com]
Sent: Monday, August 09, 2010 10:20 PM
To: Derek Ogle
Cc: R (r-help@R-project.org)
Subject: Re: [R] Function to Define a Function
On Mon, Aug 9, 2010 at 9:31
I am trying to define a general R function that has a function as the output
that depends on the user's input arguments (this may make more sense by looking
at the toy example below). My real use for this type of code is to allow a
user to choose from many parameterizations of the same general
A.Z.,
You could recreate the data (I assumed that the values are discrete integers
and not a bin for a continuous variable) ...
value - 1:6
count - c(10,8,12,9,14,7)
d - rep(value,count)
table(d)
... and then do what you want with the data in the d vector ...
summary(d)
hist(d)
On
To: Ravi Varadhan
Cc: Derek Ogle; R (r-help@R-project.org)
Subject: Re: [R] optim() not finding optimal values
A slightly better scaling is the following:
par.scale - c(1.e06, 1.e06, 1.e-05, 1) # q is scaled differently
SPoptim - optim(pars, SPsse, B=d$catch, CPE=d$cpe,
control=list
I am trying to use optim() to minimize a sum-of-squared deviations function
based upon four parameters. The basic function is defined as ...
SPsse - function(par,B,CPE,SSE.only=TRUE) {
n - length(B) # get number of years of data
B0 - par[B0]
the lines of
tapply().
Thank you for you attention!
Derek Eder
## Examples:
myData = data.frame(
ID = c(a,a,b,c,c,d,d),
visit=c(1,2,1,1,2,1,2),
score=c(10,2,12,16,0,NA,5)
)
myData
ID visit score
1 a 110
2 a 2 2
3 b 112
4 c 116
5 c 2
http://www.mm.com/user/djdees/knows/who#derek-dees
# dc:language R
# dc:rights Copyright #169;
# dc:description Creates a heatmap showing # of texts per hour per day.
# doap:SVNRepository
# doap:browse
# doap:homepage
# doap:wiki
# doap:program-language
# doap:version 1.0
# cvs:date $Date
[mailto:r...@life.ku.dk]
Sent: Saturday, April 17, 2010 2:45 PM
To: Derek Ogle
Cc: r-help@r-project.org
Subject: Re: [R] piecewise nls?
Hi Derek,
have a look at the following made-up example:
f1 - function(x){2*x}
f2 - function(x){-10*x+1}
x-rnorm(10)
x
(x0)*f1(x)
(x=0)*f2(x)
(x0)*f1
I am looking into fitting a so-called double von Bertalanffy function to fish
length-at-age data. Attempting to simplify the situation, the model looks like
this ...
Y ~ f(X; a,b,c) if x Z
Y ~ g(X; a,d,e) if x = Z
where
* f and g are non-linear functions (the traditional single von
Hello,
I am creating PDF handouts using Sweave for a beginner's R workshop. I want to
include the R code for the handout in an appendix as described (using the
listings LaTeX package) as described in ...
http://n4.nabble.com/including-Sweave-tangled-code-in-Rnw-document-tp875112p875112.html
panel.identify() # left click on selected points. Right click to exit process
trellis.unfocus()
Derek N. Eder
Gothenburg University
The most dangerous thing in the jungle is not the snakes, the spiders, the
tigers, ...
The most dangerous thing in the jungle is your mind
Thank you all. I would like to say that it was my first time posting on the
r-help mailing list. I am very impressed and grateful that I got the answer
to my problem so quickly.
Back to the issue, using read.csv (instead of read.csv) and turning off the
check.names flag solved my problem.
Derek
I am trying to convert numbers to English words, e.g. 123 - One
hundred twenty three. After some searching, I have been unable to
find any info on this. I could certainly write code to do it, but my
question is this: Does anyone know of a function that does this?
Thanks,
Derek McCrae Norton
return(format(timez,%Y-%m-%d %H:%M:%OS3,tz=CET))
}
render.t32(1245137297746)
[1] 2009-06-16 09:28:17.746
Have not succeeded in my attempts to understand POSIX
and I thank you for your attention.
~Derek
Derek N. Eder
Gothenburg University
Vigilance and Neurocognition Laboratory
?
Thanks,
Derek Lacoursiere
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https://stat.ethz.ch
Hello R users,
I have developed code in R that generates populations of non-overlapping
random polygons (polygonal maps) for testing certain stereological
estimation methods. I have tried to look for articles or papers online on
the generation of random polygonal maps and have found very
Dear All,
Does anyone know how to get the maximum/minimum value of a function using R,
I think there should be an instruction, but i can not find it in help files
Thank you in advance for your help :)
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Dear all,
When doing nonlinear regression, we normally use nls if e are iid normal.
i learned that if the form of the variance of e is not completely known,
we can use the IRWLS (Iteratively Reweighted Least Squares )
algorithm:
for example, var e*i =*g0+g1*x*1
1. Start with *w**i = *1
2.
(),
pipe(), open(), found manuals on creating my own packages, etc. but I become
increasingly aware that I don't know exactly what I am looking for (that I
am a neophyte).
Help would be appreciated
Derek
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Dear all,
Is there a instruction that can help me obtain the coefficient of
determination R^2 after doing linear/nonlinear regression using lm/nls?
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I have a list of polygons generated by the contourLines() command (each
object of the list is a list in itself with two objects: a vector of x
values, and a vector of y values for each vertex). I wish to convert that
list into a gpc.poly object of multiple contours. How do I do this? gpclib
Hi,
I have the following:
for(j in (y.raw+1):(rownum-1)){
valsum-tstfframed[min.x,j]+tstfframed[min.x,j+1]
if(valsum == 1){
cat(valsum loop)
int.num-int.num+1
}
}
but
input prompt.
This does not seem correct.
file.choose()
Enter file name:
I have seen gfile() function in the gWidgets library - but isn't there anything
native?
Thank you!
Derek Eder
Linux: Ubuntu 9.04, Gnome, [R] running in terminal or ESS GTK_Emacs (doesn't
make
comments or opinions.
Dr. Derek H. Ogle
Associate Professor of Mathematical Sciences and Natural Resources
Northland College
1411 Ellis Avenue
Box 112
Ashland, WI
715.682.1300
www.ncfaculty.net/dogle/
[[alternative HTML version deleted
I have found Sweave() to be great for producing PDF documents. I have
been experimenting with RweaveHTML (from the R2HTML) package and have
had moderate success. My main issue has been that I simply want the R
output to be shown verbatim in the HTML document but RweaveHTML tends to
convert most
www.voseconsulting.com
Derek Stephen Elmerick wrote:
I ran the memory limit function in R 2.9.0 and received the 'error'
below. The memory appears to update correctly, so there's probably no
implication beyond cosmetic; however, thought I would make sure since the
function as written did not generate
I ran the memory limit function in R 2.9.0 and received the 'error'
below. The memory appears to update correctly, so there's probably no
implication beyond cosmetic; however, thought I would make sure since the
function as written did not generate the same error in my 2.8.0 version of
R.
Thanks
Jim and Dieter,
Thank you for the quick reply and precise fix. My plot now works as
expected. Thanks again.
-Original Message-
From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-
project.org] On Behalf Of Jim Lemon
Sent: Monday, April 20, 2009 4:21 AM
To:
I am attempting to create a plot with intervals stretched in the
x-direction using plotCI() in the plotrix package. The same data
provides an appropriate set of intervals when stretched in the
y-direction but I only get a lower interval when stretched in the
x-direction.
The data are as
Sorry for posting this twice, but I still have not solved this problem
and am hoping for some assistance.
I am attempting to write a function that is flexible enough to respond
to the user providing a formula (with a data= argument) or not (similar
to plot(x,y) versus plot(y~x,data=data)). I
is to put them in a list...
for(i in 1:length(a)){
y[[i]] - read.table(paste(fpath,a[i],sep=/)
}
or with lapply...
y - lapply(1:length(a), function(i) read.table(paste(fpath,a
[i],sep=/))
Hope this helps.
Cheers,
Derek
On Mar 12, 7:52 am, tedzzx zengzhenx...@gmail.com wrote:
Dear R
I am trying to construct a two-way table where, instead of printing the
two-way frequencies in the table, I would like to print the values of a
third variable that correspond to the frequencies.
For example, the following is easily constructed in R
fact1 -
.
-Original Message-
From: r...@quantide.com [mailto:r...@quantide.com]
Sent: Friday, January 23, 2009 9:25 AM
To: Derek Ogle
Cc: r-h...@stat.math.ethz.ch
Subject: Re: [R] Table Modification
If I understood propelly
tapply(fact3, list(fact1, fact2) , paste, collapse
Bertolt,
The points you send to polygon() do not fully enclose the area you desire. Try
adding one more point as such
xt - c(x[(length(x)-cutpoint):length(x)],linepos)
yt - c(y[(length(y)-cutpoint):length(y)],0)
polygon(xt, yt, density = 10 )
-Original Message-
From: [EMAIL
I have two packages that I use locally and have been curious about moving them
to R Forge to take advantage of SVN, builds, etc. In looking into this I
stumbled across two different sites. The apparent official R Forge site at
http://r-forge.r-project.org/ and a seemingly unofficial site at
For pedagogical reasons (i.e., moving a way from tables of distributions) I
want to plot a probability density or distribution function with a shaded area
corresponding to the calculated value or user input. For example, I want a
plot to visually demonstrate the result of
pnorm(1.3)
I have
Hello,
I am attempting to fit a non-linear model (Von Bertalanffy growth model)
to fish length-at-age data with the purpose of determining if any of the
three parameters differ between male and female fish. I believe that I
can successfully accomplish this goal assuming an additive error
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