Dear R users,
Hi. I don't know if my understanding of Manova test is correct. So I test
with the following code and got strange results.
Any help would be appreciated.
y0, y1, and y2 are independently generated by the same method.
They are each split into 20 groups by the same method.
The
On 04/09/2015 5:18 PM, Roger Xu wrote:
> y0 <- runif(100, 0, 1)
> y1 <- runif(100, 0, 1)
> y2 <- runif(100, 0, 1)
>
> y0 <- c(y0, runif(100, 0, 10) )
> y1 <- c(y1, runif(100, 0, 10) )
> y2 <- c(y2, runif(100, 0, 10) )
>
> y0=as.numeric(unlist(y0))
> y1=as.numeric(unlist(y1))
>
Dear Nicholas,
On Fri, 4 Apr 2014 04:59:09 +
nicholas.suraw...@csiro.au wrote:
Greetings,
I'm interested in performing some post hoc tests after conducting a
multivariate analysis of covariance (MANCOVA) which I performed using the
Anova function in the car package. The covariate did
Greetings,
I'm interested in performing some post hoc tests after conducting a
multivariate analysis of covariance (MANCOVA) which I performed using the Anova
function in the car package. The covariate did not end up being statistically
significant, but the single factor's effect on the
I'm running a MANOVA on survey data. The dependent variables are the
ranking of each DV. So the respondent was asked to rank 7 different
subject lines, each subject line is a DV with what the respondent ranked as
datum.
I had the code running yesterday, had a computer crash, then had to rewrite
Dear All, I am trying to perform MANOVA. I have table with 504 columns(species)
and 36 rows) with two grouping (season and location)
Zx - Z[c(4:504)]
Zxm - as.matrix(Z)
m- manova(Zxm~Season*location, data=Z)
when I do summary.aov, I get respond for each species but summary.manova
On May 3, 2013, at 14:59 , Ozgul Inceoglu wrote:
Dear All, I am trying to perform MANOVA. I have table with 504
columns(species) and 36 rows) with two grouping (season and location)
Zx - Z[c(4:504)]
Zxm - as.matrix(Z)
m- manova(Zxm~Season*location, data=Z)
when I do summary.aov, I get
Dear list member,
I deperately need an help in performing a MANOVA in R, but I encountered some
problems both in the design and in the synthax with R.
I conducted a listening experiment in which 16 participants had to rate the
audio
stimuli along 5 scales representing an emotion (sad,
Dear Gian Mauro,
On Mon, 30 Jul 2012 14:44:44 +0200
Manzoni, GianMauro gm.manz...@auxologico.it wrote:
Dear Prof. John Fox,
thank you very much for your suggestions.
However, I still do not know how to use the contrasts after generating them.
Once I generate the matrix with the polynomial
Dear Prof. John Fox,
thus all I should do to test quadratic and cubic effects is to change the
second argument of the linearHypothesis() function, right?
So, for testing the cubic effect:
linearHypothesis (mod, f.C)
Is there a chapter or paragragh about contrasts in your book An R
companion for
Dear GMM,
-Original Message-
From: Manzoni, GianMauro [mailto:gm.manz...@auxologico.it]
Sent: July-30-12 9:49 AM
To: John Fox
Cc: r-help@r-project.org; Greg Snow
Subject: Re: [R] MANOVA polynomial contrasts
Dear Prof. John Fox,
thus all I should do to test quadratic and cubic
Dear Prof. John Fox,
thank you very much for your suggestions.
However, I still do not know how to use the contrasts after generating them.
Once I generate the matrix with the polynomial contrasts, what are the
following steps toward the statistical test?
A whole example would be very useful.
@sympatico.ca
Dear GMM,
-Original Message-
From: Manzoni, GianMauro [mailto:gm.manz...@auxologico.it]
Sent: July-30-12 9:49 AM
To: John Fox
Cc: r-help@r-project.org; Greg Snow
Subject: Re: [R] MANOVA polynomial contrasts
Dear Prof. John Fox,
thus all I should do to test quadratic
-project.org
Subject: Re: [R] MANOVA polynomial contrasts
Dear Prof. John Fox,
I found the paper very useful. Thank you very much for attaching the link!
Which type of SS (II or III) do you suggest for a multivariate model with
2
unbalanced factors and 2 covariates?
I think that type III
Dear Greg Snow,
thank you very much for your suggestions. However, I need an example in
order to understand fully.
I was told that, given the ordinal factor, I do not need to specify the
contr.poly function because R does it automatically.
However, I don not know if I have to add an argument into
Dear Gian,
How contrasts are created by default is controlled by the contrasts option:
getOption(contrasts)
unordered ordered
contr.treatment contr.poly
So, unless you've changed this option, contr.poly() will be used to generate
orthogonal polynomial contrasts for an
You should not need to write them yourself. Look at the contr.poly function
along with the C function (Note uppercase C) or the contrasts function.
On Monday, July 23, 2012, Manzoni, GianMauro wrote:
Dear all,
I am quite new to R and I am having trouble writing the polynomial
contrasts for an
Dear all,
I am quite new to R and I am having trouble writing the polynomial
contrasts for an ordinal factor in MANOVA.
# I have a model such as this
fit-manova(cbind(Y1,Y2,Y3)~Groups,data=Events) # where groups is an
ordinal factor with 4 levels
# how to set polynomial contrasts for the Groups
From: Helios de Rosario [mailto:helios.derosa...@ibv.upv.es]
Sent: Fri 18/05/2012 15.14
To: David Costantini; r-help@r-project.org
Subject: Re: [R] MANOVA with random factor
Hi, after re-reading I think that I misunderstood your question
-Original Message-
From: peter dalgaard [mailto:pda...@gmail.com]
Sent: Sat 19/05/2012 9.22
To: David Costantini
Cc: Helios de Rosario; r-help@r-project.org
Subject: Re: [R] MANOVA with random factor
On May 18, 2012, at 16:15 , David Costantini wrote
I suppose you mean this:
http://www.r-project.org/doc/Rnews/Rnews_2007-2.pdf
Another approach, less general but in my opinion easier to use (and
equivalent in many situations), is provided by Anova() in package car.
See:
Hi, after re-reading I think that I misunderstood your question. You
don't provide many details, but I suppose that the brood effect is
nested within the fixed effects, so you don't mean a multivariate
approach for a split-plot or a repeated-measures design, but the
analysis of a multivariate
http://www.ornisitalica.com
http://www.birdcam.it
From: Helios de Rosario [mailto:helios.derosa...@ibv.upv.es]
Sent: Fri 18/05/2012 15.14
To: David Costantini; r-help@r-project.org
Subject: Re: [R] MANOVA
Dear All
I would need to perform a MANOVA with both fixed (group, sex, group*sex) and
random (brood) effects. I wonder if this is at all possible and if R does that.
At the moment, I only know that I can run a classic MANOVA with R.
Thank you
David
__
Hi John,
Thanks again. That looks like an easy and convenient approach. Regards,
Chris
--
View this message in context:
http://r.789695.n4.nabble.com/MANOVA-and-Extra-Sums-of-Squares-Tests-tp4470077p4472265.html
Sent from the R help mailing list archive at Nabble.com.
I would like to conduct an extra sum-of -squares test that compares a full
MANOVA model (with all 1st order interactions) to a reduced model (no
interactions) to determine if I can drop all interactions at the same time.
This is analagous to an extra sum-of-squares F-test in ANOVA, but instead
Dear chris33,
You can use the anova() function to compare the two multivariate linear models.
Alternatively, the Anova() function in the car package will compute type II
or type III MANOVA tests, which aren't quite what you're asking about.
I hope this helps,
John
Hi John,
Thanks for your response. The anova funtion will not work in my case,
because I have multiple response variables. In other words, I would like to
conduct an extra sums-of-squares and cross-products test between the
following models:
FULL.MODEL: (Y1, Y2, Y3, Y4, Y5) as a function of
Dear chris33,
Well, actually as I said, the anova() function *will* do what you want. You can
fit multivariate linear models with lm(),
mod.1 - lm(cbind(Y1, Y2, Y3, Y4, Y5) ~ X1*X2 +X1*X3 + X1*X4)
mod.2 - lm(cbind(Y1, Y2, Y3, Y4, Y5) ~ X1 + X2 + X3 + X4)
and then use anova() to get
Hello,
I am trying to do a manova test in r, and have used the manova function to
test differences between two dependent variables. The results were
significant for the whole model, but the sources I've read say that in order
to do a post-hoc multiple comparison, I have to do separate aovs for
I used manova() with one predictor variable and four factor levels call them
A, B, C, and D. There are 12 response variables. I now want to perform
pairwise comparisons for A-B, A-C, etc. for all 12 response variables.
If I were doing an ANOVA test I would run TukeyHSD() and be done. However
'
Subject: Re: [R] manova question
Dear John, Peter and others,
So, I now have a query at an even more elementary level and that is
regarding my results from anova.mlm() not matching the car package's
Manova(). Specifically, I have been trying the following out with regard
to a simple one
dalgaard
Sent: March-20-11 6:50 PM
To: Ranjan Maitra
Cc: R-help
Subject: Re: [R] manova question
On Mar 20, 2011, at 21:05 , Ranjan Maitra wrote:
Dear friends,
Sorry for this somewhat generically titled posting but I had a
question with using contrasts in a manova
-project.org]
On Behalf Of Ranjan Maitra
Sent: March-22-11 8:36 PM
To: 'R-help'
Subject: Re: [R] manova question
Dear John, Peter and others,
So, I now have a query at an even more elementary level and that is
regarding my results from anova.mlm() not matching the car package's
Manova
Dear friends,
Sorry for this somewhat generically titled posting but I had a question
with using contrasts in a manova context. So here is my question:
Suppose I am interested in doing inference on \beta in the case of the
model given by:
Y = X %*% \beta + e
where Y is a n x p matrix of
On Mar 20, 2011, at 21:05 , Ranjan Maitra wrote:
Dear friends,
Sorry for this somewhat generically titled posting but I had a question
with using contrasts in a manova context. So here is my question:
Suppose I am interested in doing inference on \beta in the case of the
model given by:
McMaster University
Hamilton, Ontario, Canada
http://socserv.mcmaster.ca/jfox
-Original Message-
From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org]
On Behalf Of peter dalgaard
Sent: March-20-11 6:50 PM
To: Ranjan Maitra
Cc: R-help
Subject: Re: [R] manova
How do I get MANOVA results with Type III sums of squares?
[[alternative HTML version deleted]]
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide
On Dec 2, 2010, at 4:18 PM, Ali S wrote:
How do I get MANOVA results with Type III sums of squares?
First pull on your asbestos underwear, then visit :
Sam Brown wrote:
Hi Michael
Thank you very much for the intel regarding eta^2. It is pretty much the sort of thing that I am wanting.
The latest developer version of the heplots package on R-Forge now
includes an initial implementation of etasq() for
multivariate linear models. Note that
Hi Michael
Thank you very much for the intel regarding eta^2. It is pretty much the sort
of thing that I am wanting.
Found a good paper regarding all this:
Estimating an Effect Size in One-Way Multivariate Analysis of Variance (MANOVA)
H. S. Steyn Jr; S. M. Ellisa
Multivariate Behavioral
I think you are looking for a multivariate measure of association,
analogous to R^2 for a univariate linear model. If so, there are
extensions of eta^2 from univariate ANOVAs for each of the multivariate
test statistics, e.g.,
for Pillai (-Bartlett) trace and Hotelling-Lawley trace and a given
Hello everybody
After doing a MANOVA on a bunch of data, I want to be able to make some comment
on the amount of variation in the data that is explained by the factor of
interest. I want to say this in the following way: XX% of the data is explained
by A.
I can acheive something like
variables that I generated with the rmnorm() method, the only
difference between them is that I used different means.
Any ideas? Thank you for your time :-D
--
View this message in context:
http://n4.nabble.com/R-MANOVA-help-tp1570300p1570300.html
Sent from the R help mailing list archive at Nabble.com
Hello, mailing list!
I'm using a manova in R to study the responses of four dependent variables. I
would like to do a post hoc analysis, but I don`t know which is the best and
how to introduce in R.
I'm using a pairwise t test, but I'm not sure if it is correct, I like to use
tukeyHSD, but
Dear Sir,
I am Davide Floriello and I am a student in mathematics. I have got a problem
with the MANOVA commands. I write here what I have done:
PV - read.table('PV.txt')
PV - data.frame(PV)
g - 12
p - 2
REL - factor(PV$REL)
HPV - factor(PV$HPV)
fit - manova(as.matrix(PV) ~ REL + HPV +
Dear Davide,
-Original Message-
From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org]
On
Behalf Of Davide Floriello
Sent: May-16-09 8:51 AM
To: r-help@r-project.org
Subject: [R] MANOVA
Dear Sir,
I am Davide Floriello and I am a student in mathematics. I have
Hi All,
I have questions about MANOVA which I am still not sure if appropriately I
should use it.
For example I have a data set like this:
BloodPressure (BP) Weight Height
120115165
125145198
15699 176
I know that BloodPressure is correlated with both
You only have one response variable, so MANOVA is not appropriate. One
option would be to compare BP ~ Weight + Height with BP ~ 1. That would
give you a joint test of weight and height together. Since they are
collinear, that should tell you the overall effect of size. There are
other options,
Another method would be to use a summary that incorporates both as a
measure of obesity, In medical investigations it is common to use the
BMI which is the ratio of (weight in Kg) to (height in meters squared).
Yet a third method would be to investigate for nonlinearity on the
response
No, MANOVA is for Multivariate analysis of variance which is used if there
are multiple responses as well as variables but you just have one response
which is blood pressure. You should just have
model - lm(BP ~Weight+Height)
anova(model)
If Weight is related to Height only one should be
Please see the footer of this message: we need to know what you did.
Also, SAS may have made some assumptions for you without telling you (for
example used a numerically ill-conditioned covariance matrix), and we
don't know what you did in SAS, either.
On Tue, 12 Aug 2008, Pedro Mardones
Dear all;
working with a 'fat' data set (700 variables / 50 samples) and trying
to run a manova test on it (I'm aware that it's not the best option
for this kind of data set) I got the error in the summary.manova
function about the rank of the residuals (rank # variables). Ok. The
thing that I
Bonjour,
we wanted to fit a manova as descripted in Marieta /et al./ 2003,
convergent habitat segregation of /Aedes aegyptii/ and /Aedes
albopictus/ (Diptera: /Culicidae/) in Southern Brazil and Florida, /J.
Med. Entomol./, *40* (6), 785-794. They did their analysis with SAS
software.
We have
This may be a silly question to ask, but, is it possible do do a
MANOVA-style analysis with a generalized linear model? I have a data
set that I'm working with that, for each variable (time in this case,
as it's a repeated measures MANOVA) is fit much better using glm
rather than a
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