[R] R package equivalent to Excel SOLVER - Paquete R equivalente a SOLVER de Excel

2012-01-08 Thread Ricardo Bandin
Esteemed colleagues I wonder if there is a package in R that performs the functions of the Excel SOLVER. Thanks in advance for the reply. Best regards, - Estimados colegas Me pregunto si hay un paquete en R que funcione como el SOLVER de Excel. De antemano gracias por

Re: [R] package sampling

2012-01-08 Thread Thomas Lumley
On Fri, Jan 6, 2012 at 5:30 PM, blueberry1228 wrote: > > After trouble shooting for a long time, believe me it's  miserable, I > finally found: There's conflict between Hmisc and sampling packages. > > I suggest if strata pops unusual error like this, you should check if your > libraries are inco

Re: [R] package sampling

2012-01-05 Thread blueberry1228
Hi, I would like to attach my answer although this question has been posted here for more than a year. I believe some people may meet the same problem. I use sampling package to do the stratified sampling as well, using strata() function. And everything goes well before I add another library: Hmis

[R] Inverse problems in R package

2011-12-24 Thread Jin Minming
Dear  all,   I have a general relationship, which can be easily solved using forward engineering model, y=f(x1, x2, x3) Now I know a distribution of y, how can I get the corresponding distributions for x1, x2, and x3? In another situation, if I know the distributions of y and x1, how can I ob

[R] R package(s) for IRT scoring?

2011-12-17 Thread Prisciandaro, James J
Hello forum, I have developed an IRT model for a set of items on a large reference sample. I now want to use the IRT parameters that were estimated in the reference sample to score new individuals, one at a time. What R package(s) would allow me to do this? Also, several covariates were

Re: [R] Package/command for creating a table of panel models ?

2011-12-12 Thread ManuelS
Thank you! I'm going to look into that straight away. Manu -- View this message in context: http://r.789695.n4.nabble.com/Package-command-for-creating-a-table-of-panel-models-tp4185744p4186077.html Sent from the R help mailing list archive at Nabble.com.

Re: [R] Package/command for creating a table of panel models ?

2011-12-12 Thread Achim Zeileis
On Mon, 12 Dec 2011, ManuelS wrote: Hello Everyone (Quick) question: Does anyone know a package/command or simply a way of creating a table of different panel data estimations (estimated using /*plm()*/ ) just as *mtable()* does for models estimated with /*lm()*/? It seems *mtable* (and *apsrt

[R] Package/command for creating a table of panel models ?

2011-12-12 Thread ManuelS
Hello Everyone (Quick) question: Does anyone know a package/command or simply a way of creating a table of different panel data estimations (estimated using /*plm()*/ ) just as *mtable()* does for models estimated with /*lm()*/? It seems *mtable* (and *apsrtable* equally) only support /*lm*/ and

Re: [R] args() function does not list function prototype for locally-produced/installed R package

2011-12-07 Thread Rick Reeves
: > Greetings: > > I have check the 'Building R Extensions' manual and can find no advice > on this issue, > so I am asking -- > > I have created an R package consisting entirely of R source code, and > created an installer > using the R CMD build / R CMD check comma

Re: [R] args() function does not list function prototype for locally-produced/installed R package

2011-12-05 Thread Duncan Murdoch
On 11-12-05 3:04 PM, Rick Reeves wrote: > Greetings: > > I have check the 'Building R Extensions' manual and can find no advice > on this issue, > so I am asking -- > > I have created an R package consisting entirely of R source code, and > created an install

[R] args() function does not list function prototype for locally-produced/installed R package

2011-12-05 Thread Rick Reeves
Greetings: I have check the 'Building R Extensions' manual and can find no advice on this issue, so I am asking -- I have created an R package consisting entirely of R source code, and created an installer using the R CMD build / R CMD check commands. The package installs correctl

[R] R package source branching

2011-12-01 Thread Mehmet Suzen
Dear List, I was wondering if any of you worked on an R package which has many branches on a repository i.e. SVN. Is it recommended to branch an R package source tree based on a specific project? I know it depends on project but it would be great to hear opinions from R community. Best

Re: [R] Package "field" missing from repositories

2011-11-30 Thread David Winsemius
On Nov 30, 2011, at 1:15 PM, joseph.s...@geog.ubc.ca wrote: Hi all; After an overnight Ubuntu upgrade to 10.10, I had to reinstall some R packages. But the "fields" package appears to be missing from my usual repository, and a few of the other repositories I've tested: install.packages('

[R] Package "field" missing from repositories

2011-11-30 Thread joseph . shea
Hi all; After an overnight Ubuntu upgrade to 10.10, I had to reinstall some R packages. But the "fields" package appears to be missing from my usual repository, and a few of the other repositories I've tested: >install.packages('fields',lib='/usr/local/lib/R/site-library',repos='http://cran.st

Re: [R] R package for nested random-effects ANOVA models

2011-11-24 Thread Ben Bolker
syrvn gmx.net> writes: > > Hello, > > can anyone recommend an R package which can deal with nested random-effects > ANOVA models? > > Cheers > > Syrvn lme in the nlme package; lmer in the lme4 package; and/or visit the r-sig-mi

[R] R package for nested random-effects ANOVA models

2011-11-24 Thread syrvn
Hello, can anyone recommend an R package which can deal with nested random-effects ANOVA models? Cheers Syrvn -- View this message in context: http://r.789695.n4.nabble.com/R-package-for-nested-random-effects-ANOVA-models-tp4104374p4104374.html Sent from the R help mailing list archive at

Re: [R] Compile R package under Windows

2011-11-22 Thread Uwe Ligges
On 22.11.2011 18:57, Nicola Sturaro Sommacal wrote: Hi. I need to compile an R package under Windows, to get a zip file. I can't used the web services, because it is avalaible only for the current version of R while I need of a package compiled with R 2.13.1. The package contain C code

[R] Compile R package under Windows

2011-11-22 Thread Nicola Sturaro Sommacal
Hi. I need to compile an R package under Windows, to get a zip file. I can't used the web services, because it is avalaible only for the current version of R while I need of a package compiled with R 2.13.1. The package contain C code that requires the GSL C library. In your experience,

Re: [R] package installtion

2011-11-17 Thread Scott Raynaud
See my responses in brackets below.   - Original Message - From: Rolf Turner To: Scott Raynaud Cc: "r-help@r-project.org" Sent: Wednesday, November 16, 2011 6:04 PM Subject: Re: [R] package installtion On 17/11/11 05:37, Scott Raynaud wrote: > That might be an option if

Re: [R] package installtion

2011-11-17 Thread R. Michael Weylandt
al Message - > From: Rolf Turner > To: Scott Raynaud > Cc: "r-help@r-project.org" > Sent: Wednesday, November 16, 2011 6:04 PM > Subject: Re: [R] package installtion > > On 17/11/11 05:37, Scott Raynaud wrote: >> That might be an option if it were

[R] package installtion

2011-11-17 Thread Scott Raynaud
aud Cc: "r-help@r-project.org" Sent: Wednesday, November 16, 2011 6:04 PM Subject: Re: [R] package installtion On 17/11/11 05:37, Scott Raynaud wrote: > That might be an option if it weren't my most important predictor.  I'm > thinking my best bet is to use MLWin for

Re: [R] package installtion

2011-11-16 Thread Rolf Turner
On 17/11/11 05:37, Scott Raynaud wrote: That might be an option if it weren't my most important predictor. I'm thinking my best bet is to use MLWin for the estimation since it will properly set fixed effects to 0. All my other sample size simulation programs use SAS PROC IML which I don't

[R] package installtion

2011-11-16 Thread Scott Raynaud
MLWin sets the associated fixed effects to 0.  When R choked, I increased from 20 to 60 as my minimum as suggested in the MLPowSim documentation.  Still no luck.   - Original Message - From: Uwe Ligges To: r-help@r-project.org Cc: Scott Raynaud Sent: Wednesday, November 16, 2011 1:01

Re: [R] package installtion

2011-11-16 Thread Uwe Ligges
Ligges - Original Message - From: Uwe Ligges To: Scott Raynaud Cc: "r-help@r-project.org" Sent: Wednesday, November 16, 2011 9:48 AM Subject: Re: [R] package installtion On 16.11.2011 16:08, Scott Raynaud wrote: All right. I upped my level 2 sampl

[R] package installtion

2011-11-16 Thread Scott Raynaud
I like R since it's free, but I can't work around the problem I'm currently having.   - Original Message - From: Uwe Ligges To: Scott Raynaud Cc: "r-help@r-project.org" Sent: Wednesday, November 16, 2011 9:48 AM Subject: Re: [R] package installtion On 16.11

Re: [R] package installtion

2011-11-16 Thread Uwe Ligges
ere's a way to do this. Why don't you simply delete that variable and hence don't estimate coefficients for it Uwe Ligges - Forwarded Message - From: Scott Raynaud To: "r-help@r-project.org" Cc: Sent: Wednesday, November 16, 2011 7:28 AM Subject: Re: [R]

[R] package installtion

2011-11-16 Thread Scott Raynaud
d Message - From: Scott Raynaud To: "r-help@r-project.org" Cc: Sent: Wednesday, November 16, 2011 7:28 AM Subject: Re: [R] package installtion Well, I could increase the sample size for my second level in hopes that my simulation would run correctly.  However, a better solution

Re: [R] package installtion

2011-11-16 Thread Scott Raynaud
an be done.  I've looked at the documentation but it's still not clear.   - Original Message - From: Uwe Ligges To: Scott Raynaud Cc: "r-help@r-project.org" Sent: Wednesday, November 16, 2011 2:44 AM Subject: Re: [R] package installtion On 15.11.2011 21:34, Scott Rayn

Re: [R] package installtion

2011-11-16 Thread Uwe Ligges
On 15.11.2011 21:34, Scott Raynaud wrote: OK, I think I see the problem. Rather than setting method="nAGQ" I need nAGQ=1. Doing so throws the following error: Congratulations, now you understood what R meant with its message "Argument ‘method’ is deprecated." "Warning messages: 1: glm.

Re: [R] package installtion

2011-11-15 Thread Scott Raynaud
OK, I think I see the problem.  Rather than setting method="nAGQ" I need nAGQ=1.  Doing so throws the following error: "Warning messages: 1: glm.fit: algorithm did not converge 2: In mer_finalize(ans) : gr cannot be computed at initial par (65) Error in diag(vcov(fitmodel)) :   error in evaluat

Re: [R] package installtion

2011-11-15 Thread Scott Raynaud
Never mind-I fixed it. My script is throwing the following error: "Error in glmer(formula = modelformula, data = data, family = binomial(link = logit),  :   Argument ‘method’ is deprecated. Use ‘nAGQ’ to choose AGQ.  PQL is not available." I remember hearing somewhere that PQL is no longer av

[R] package installtion

2011-11-15 Thread Scott Raynaud
I'm getting the following error in a script: "Error: could not find function "lmer."    I'm wondering of my lme4 package is installed incorrectly.  Can someone tell me the installation procedure?  I looked at the support docs but couldn't translate that into anything that would work. __

Re: [R] R package for segmentation with both continuous and categorical input variables XXXX

2011-11-11 Thread Ingmar Visser
ocumented (with good examples in the > documentation) R package/function that performs segmentation (cluster, > mixture modeling) of a population using both continuous and categorical > input variables? > > Thank you, > > Dan > >

[R] online recursive lssvm r package

2011-11-10 Thread Waverley @ Palo Alto
Hi, I am looking for a R package which can do online recursive training, e.g. online recursive LSSVM algorithm. Can some one help? Thanks. Waverley. [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https

[R] R package for segmentation with both continuous and categorical input variables XXXX

2011-11-10 Thread Dan Abner
Hello everyone, Can anyone suggest a decently documented (with good examples in the documentation) R package/function that performs segmentation (cluster, mixture modeling) of a population using both continuous and categorical input variables? Thank you, Dan [[alternative HTML version

[R] Package build/check OK, install looking for irrelevant function

2011-11-09 Thread Bryan Hanson
Hello R Users: I have 3 packages that I authored and they build and check just fine locally. However, when I try to install the local source packages (from the .tar.gz), I get the following message: Error in `+.POSIXt`(as.POSIXct(origin, tz = tz, ...), x) : could not find function "%is.a%"

[R] package descr: create weighted cross tabulation

2011-11-01 Thread Marion Wenty
hello, using the package "descr" i created a crosstab e.g.: Table <- crosstab(age,question,weight=pond) "age": being a variable that consists of the surveyed data of the ages of children: the values are "6 years", "7 years" and "8 years". "question": is a variable that consists of the answers of

Re: [R] package for time series

2011-10-27 Thread Rich Shepard
On Thu, 27 Oct 2011, Mehmet Suzen wrote: This book is also pretty good: Introductory Time Series with R Paul S.P. Cowpertwait and Andrew V. Metcalfe http://www.springer.com/statistics/statistical+theory+and+methods/book/9 78-0-387-88697-8 There's also: "Time Series Analysis and its Applicati

Re: [R] package for time series

2011-10-27 Thread 1Rnwb
if you are a beginer then try this http://www.stat.pitt.edu/stoffer/tsa2/R_time_series_quick_fix.htm there are lots of books and their exercises available on the authors website. also search in google books http://books.google.com/books?id=0fRcUmyhUIQC&printsec=frontcover&source=gbs_ge_summary_r&c

Re: [R] package for time series

2011-10-27 Thread Mehmet Suzen
n...@r-project.org] >On Behalf Of Duncan Murdoch >Sent: 27 October 2011 16:29 >To: rgui >Cc: r-help@r-project.org >Subject: Re: [R] package for time series > >On 27/10/2011 11:08 AM, rgui wrote: >> hi, >> >> I want any suggestion for a differents packages to manipulate

Re: [R] package for time series

2011-10-27 Thread Duncan Murdoch
On 27/10/2011 11:08 AM, rgui wrote: hi, I want any suggestion for a differents packages to manipulate a time series. thanks for help. See the Time Series task view on http://cran.r-project.org/web/views/. Duncan Murdoch __ R-help@r-project.org mai

Re: [R] package for time series

2011-10-27 Thread R. Michael Weylandt
http://lmgtfy.com/?q=CRAN+time+series+analysis Michael On Thu, Oct 27, 2011 at 11:08 AM, rgui wrote: > hi, > > I want any suggestion for a differents packages to manipulate a time series. > > thanks for help. > > > -- > View this message in context: > http://r.789695.n4.nabble.com/package-for-t

[R] package for time series

2011-10-27 Thread rgui
hi, I want any suggestion for a differents packages to manipulate a time series. thanks for help. -- View this message in context: http://r.789695.n4.nabble.com/package-for-time-series-tp3944825p3944825.html Sent from the R help mailing list archive at Nabble.com.

Re: [R] Package snow: is there any way to check if a cluster is "acticve"

2011-10-13 Thread Claudia Beleites
Sören, have a look at package snowfall which provides sfIsRunning. HTH Claudia Am 13.10.2011 06:34, schrieb Søren Højsgaard: Is there a 'proper' way of checking if cluster is active. For example, I create a cluster called .PBcluster str(.PBcluster) List of 4 $ :List of 3 ..$ con :Cl

[R] Package snow: is there any way to check if a cluster is "acticve"

2011-10-12 Thread Søren Højsgaard
Is there a 'proper' way of checking if cluster is active. For example, I create a cluster called .PBcluster > str(.PBcluster) List of 4 $ :List of 3 ..$ con :Classes 'sockconn', 'connection' atomic [1:1] 3 .. .. ..- attr(*, "conn_id")= ..$ host: chr "localhost" ..$ rank: int 1 ..- at

[R] Package/Function for Blending Images

2011-10-11 Thread Kay Cichini
Hi there, Does someone know a package/function for blending two pictures or to add transparency.. Thanks in advance, KC - Kay Cichini Postgraduate student Institute of Botany Univ. of Innsbruck -- View this message in context: http://r.7896

Re: [R] package dlm: dlmForecast()

2011-10-10 Thread Giovanni Petris
I haven't tried this, but I am pretty confident that using dlmFilter() with fictitious future values of the observations set to NA should do the job. Hope this helps, Giovanni Petris On Sat, 2011-10-08 at 13:21 +, YuHong wrote: > > May I have a question about dlmForecast() function in the p

[R] package dlm: dlmForecast()

2011-10-08 Thread YuHong
May I have a question about dlmForecast() function in the package 'dlm'? This function 'dlmForecast()' currently only deals with constant models. May anyone suggest on how to predict using non-constant model? Thanks a lot! Regards, Hong Yu

[R] Package lattice: levelplot for matrix method produces images with blank lines ...

2011-09-27 Thread Pepito Grillo
Dear R-users, I am trying to produce a levelplot of a matrix of values (430x430) using "levelplot" from lattice package. My problem is that I am not able to obtain an image without blank/white lines in some rows and columns (a continuous image). Attached are two png files (different resolution)

Re: [R] Package for Neural Network Classification Quality

2011-09-27 Thread Claudia Beleites
Alejandro, Hi, somebody knows about one R-package which i can evaluate quality (recall, precision, accuracy, etc) of Neural network classification with more than 2 classes. I found ROCT package, http://cran.r-project.org/web/packages/ROCR/index.html, but it only workes with binary

[R] Package for Neural Network Classification Quality

2011-09-26 Thread Alejandro Coca Castro
Hi, somebody knows about one R-package which i can evaluate quality (recall, precision, accuracy, etc) of Neural network classification with more than 2 classes. I found ROCT package, http://cran.r-project.org/web/packages/ROCR/index.html, but it only workes with binary classifications, Best

Re: [R] package / function for monitoring processes?

2011-09-21 Thread jim holtman
Here is the function I use: my.stats <- function (text = "stats", reset = FALSE, oper = "") { procTime <- proc.time()[1:3] if (reset) { Level <<- 1 Stack[Level, ] <<- c(procTime[3], procTime[1] + procTime[2]) } if (oper == "push") { if (Level < MaxLevel)

Re: [R] Package dependency

2011-09-21 Thread Uwe Ligges
On 21.09.2011 06:20, Tyler Rinker wrote: Greetings R community, I am making my first package and have run into the need to use other packages. I pass all the checks in the command prompt running Rcmd check package.name. In the Description file I have included: Depends: R (>= 2.13), plot

[R] Package dependency

2011-09-20 Thread Tyler Rinker
Greetings R community, I am making my first package and have run into the need to use other packages. I pass all the checks in the command prompt running Rcmd check package.name. In the Description file I have included: Depends: R (>= 2.13), plotrix Repository: CRAN Now I create the zip

[R] package / function for monitoring processes?

2011-09-20 Thread Benjamin Tyner
Hi I recall running across a function a while back which would return information about running processes (such as their cpu and memory usage), but I cannot seem to locate it. Wondering if someone would be kind enough to refresh my memory. I vaguely recall it was parsing the output of the 'ps

Re: [R] package documentation of S4 methods

2011-09-20 Thread Hassaan Aamir
El Gorgonzola hotmail.com> writes: > My question: how do you document methods of S4-classes in a package? > It works fine for the method "show" but it does not work for "showall", > for which I had to define the generic function first. What can I do to > fix this, or is it better to just define

[R] Building R package with precompiled shared library

2011-09-13 Thread Francesco Finazzi
Dear R users, we are trying to build a R package that includes a precompiled shared library, let's say mylib.so. We created the skeleton of the package and we moved the mylib.so file into the libs folder that we created at the same level of the folders man and R. Moreover we created the

Re: [R] several functions in one *.R file in a R package

2011-09-08 Thread Duncan Murdoch
On 11-09-08 5:28 AM, Jannis wrote: Thanks, Duncan, for your reply. You are right, the () in my code are not correct. Maybe my problem is that I do not really understand the exact effect of this dot . I have no tried with the following file in my /R folder in the package: mainfunction<- function

Re: [R] several functions in one *.R file in a R package

2011-09-08 Thread Jannis
Thanks, Duncan, for your reply. You are right, the () in my code are not correct. Maybe my problem is that I do not really understand the exact effect of this dot . I have no tried with the following file in my /R folder in the package: mainfunction<- function(x) { x2 <- .subfunction1(x)

Re: [R] several functions in one *.R file in a R package

2011-09-06 Thread Duncan Murdoch
On 11-09-06 10:26 AM, Jannis wrote: Dear list members, i have build a package which contains a collection of my frequently used functions. To keep the code organized I have broken down some rather extensive and long functions into individual steps and bundled these steps in sub-functions tha

[R] several functions in one *.R file in a R package

2011-09-06 Thread Jannis
Dear list members, i have build a package which contains a collection of my frequently used functions. To keep the code organized I have broken down some rather extensive and long functions into individual steps and bundled these steps in sub-functions that are called inside the main function.

[R] package gmp installation problem

2011-09-05 Thread Giacomo Bezzi
Hello everybody, Trying to install the package gmp I get the following errors and fail to install: Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/usr/local/lib/R/site-library/gmp/libs/gmp.so': libgmp.so.10: cannot open shared object file: No such file or dire

[R] Lee-Carter in R package

2011-08-29 Thread Cristina Guimaraes
Dear all, I'm forecasting health services utilization using Lee-Carter method. I have a routine to run LC method in R package, and I understood all steps to model and forecasting the rates by this method, except two things: 1) how to adjust the estimated admission rates by the total numb

[R] Package missForest changes data types?

2011-08-24 Thread nima82
Hi, I'm trying to impute a data set consisting of mixed type variables, mostly logical, but also ordered and non-ordered factors, and numeric variables with the missForest package. Although the help file of missForest states that the resulting data matrix 'ximp' has the same type as the original d

Re: [R] Package Installation in osx

2011-08-22 Thread Prof Brian Ripley
This was garbled en route, but (a) Your R is far too old: please update as the posting guide asked of you. (You seem to be using a pre-release of 2.11.0.) (b) You need to set DISPLAY, as the message says. It usually is set at a Mac OS X console, so perhaps you need to ask on R-sig-mac about

[R] Package Installation in osx

2011-08-22 Thread Ehsan Karim
Dear List: Wondering how to get around the following problem: any suggestions are welcome. Cheers, Ehsan > install.packages("geepack")Warning in install.packages("geepack") :  argument > 'lib' is missing: using '/home/grad/student/Library/R/2.11/library'--- Please > select a CRAN mirror for u

Re: [R] Best way to setClass and setMethod for an R package?

2011-08-21 Thread Martin Morgan
On 08/21/2011 05:56 AM, Uwe Ligges wrote: On 21.08.2011 00:48, Jonathan Greenberg wrote: Folks: I'm putting together an R package, and I was wondering where, specifically, I put both class definitions (via setClass) as well as setMethod calls? Is there a particular file name I need t

Re: [R] Best way to setClass and setMethod for an R package?

2011-08-21 Thread Uwe Ligges
On 21.08.2011 00:48, Jonathan Greenberg wrote: Folks: I'm putting together an R package, and I was wondering where, specifically, I put both class definitions (via setClass) as well as setMethod calls? Is there a particular file name I need to use? No, any file name

[R] Best way to setClass and setMethod for an R package?

2011-08-20 Thread Jonathan Greenberg
Folks: I'm putting together an R package, and I was wondering where, specifically, I put both class definitions (via setClass) as well as setMethod calls? Is there a particular file name I need to use? Thanks! --j -- Jonathan A. Greenberg, PhD Assistant Project Scientist Center for Sp

Re: [R] Package or procedure recommendations for analysis of repeated cross-sections?

2011-07-26 Thread andrewH
OK, Ive done more research, and I think that what I am looking for is "repeated cross section" or "pseudo-panel" estimators. Does anyone know if these have been implimented inany r package? -- View this message in context: http://r.789695.n4.nabble.com/Package-or-procedure

[R] Package or procedure recommendations for analysis of repeated cross-sections?

2011-07-25 Thread andrewH
I have a survey data set of 6 years and about 1500 persons surveyed per year, with roughly 200 questions per survey. The samples are drawn independently without replacement and are intended to represent the nation (USA). I would like to create something like a synthetic panel, dividing the respond

Re: [R] Hardy Weinberg Case Control Test in gap R package

2011-07-20 Thread Brad McNeney
Hardy Weinberg Case Control Test in gap R package > Hi, > I am using the gap R package to do the Hardy Weinberg Case Control > test for > many SNP. I am not sure what the values initial1 and initial2 should > be for > the test. I tried values but they failed. > I emailed th

Re: [R] R package: pbatR

2011-07-14 Thread Lisa
Thanks. I have installed PBAT on my computer. -- View this message in context: http://r.789695.n4.nabble.com/R-package-pbatR-tp3667844p3667907.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list https

Re: [R] R package: pbatR

2011-07-14 Thread David Winsemius
t download PBAT (developed by Christoph Lange) and accept it's license, available on the PBAT webpage." -- david. On Jul 14, 2011, at 11:05 AM, Lisa wrote: Dear All, Does anybody have experience with R package pbatR (http://cran.r-project.org/web/packages/pbatR/index.html)? I

[R] R package: pbatR

2011-07-14 Thread Lisa
Dear All, Does anybody have experience with R package pbatR (http://cran.r-project.org/web/packages/pbatR/index.html)? I am trying to use it to analyze the family-based case-control data, but the package totally doesn’t work on my computer. I contacted the authors of the package, but I haven’t

Re: [R] Package rrcov, functions PcaCov, PcaHubert, PcaGrid

2011-07-13 Thread albina1985
Ok, thank you Mark. I also found out, that it is not a good idea to perform a Pca with the equal numbers of observation and variables. It is preferable to have much more observations. Regards, Albina. -- View this message in context: http://r.789695.n4.nabble.com/Package-rrcov-functions-PcaCov

Re: [R] Package rrcov, functions PcaCov, PcaHubert, PcaGrid

2011-07-13 Thread Mark Difford
On Jul 13, 2011; 12:03pm Albina wrote: > Error: diff(sv)<0 ist not all TRUE > ... . >snip< > The same error occurs with the other functions. What does this mean and > how can I perform the robust > PCA with these functions by using a quadratic matrix as input? Albina, You at least need to feed

[R] Package rrcov, functions PcaCov, PcaHubert, PcaGrid

2011-07-13 Thread albina1985
Hello, I'm using the R-2.13.1 version in Windows and I'm trying to do a robust Pca with the following: x<-matrix(0.5,30,30) library("rrcov") y<-PcaCov(x) The following error occurs: Error: diff(sv)<0 ist not all TRUE The same error occurs with the other functions. What does this mean and how

Re: [R] Hardy Weinberg Case Control Test in gap R package

2011-07-12 Thread Jim Silverton
Hi, I am using the gap R package to do the Hardy Weinberg Case Control test for many SNP. I am not sure what the values initial1 and initial2 should be for the test. I tried values but they failed. I emailed the author but to no avail. There seems to be some documentation that is deleted at the

Re: [R] Package "survival" --- Difference of coxph strata with subset?

2011-07-10 Thread ryusuke
Finally, I found the answer from here... http://www.childrensmercy.org/stats/weblog2005/StratifiedCoxRegression.asp http://www.childrensmercy.org/stats/weblog2005/StratifiedCoxRegression.asp Thernau and Grambsch describe it well in their book on survival analysis. /Analysis of multicenter clinica

[R] Package "survival" --- Difference of coxph strata with subset?

2011-07-10 Thread ryusuke
[code]>require("survival") > coxph(Surv(futime,fustat)~age + strata(rx),ovarian) Call: coxph(formula = Surv(futime, fustat) ~ age + strata(rx), data = ovarian) coef exp(coef) se(coef) z p age 0.137 1.15 0.0474 2.9 0.0038 Likelihood ratio test=12.7 on 1 df, p=0.000368 n= 26,

Re: [R] BY GROUP in evir R package

2011-07-07 Thread Pfaff, Bernhard Dr.
> > > > - Original Message > From: "Pfaff, Bernhard Dr." > To: Peter Maclean ; Dr. Bernhard Pfaff > > Cc: "r-help@r-project.org" > Sent: Wed, July 6, 2011 8:17:12 AM > Subject: AW: [R] BY GROUP in evir R package > > Hello Pet

Re: [R] BY GROUP in evir R package

2011-07-06 Thread Peter Maclean
ct: AW: [R] BY GROUP in evir R package Hello Peter, str(rg2) us quite revealing for this; by() returns a list and hence lapply() can be employed, e.g.: lapply(rg2, rlevel.gev, k.blocks = 5) By the same token, you can extract the relevant bits and pieces and put them together in a data.fr

Re: [R] BY GROUP in evir R package

2011-07-06 Thread Pfaff, Bernhard Dr.
che Nachricht- > Von: r-help-boun...@r-project.org > [mailto:r-help-boun...@r-project.org] Im Auftrag von Peter Maclean > Gesendet: Mittwoch, 6. Juli 2011 09:25 > An: Dr. Bernhard Pfaff > Cc: r-help@r-project.org > Betreff: Re: [R] BY GROUP in evir R package > > Dr. P

Re: [R] BY GROUP in evir R package

2011-07-06 Thread Peter Maclean
June 3, 2011 2:45:28 PM Subject: Re: BY GROUP in evir R package Hello Peter, many thanks for your email. Well, as you might have guessed, there is also a function by() in R that does the same job. See help("by") for more information. Best, Bernhard Peter Maclean schrieb: > Hi, >

Re: [R] R package Forecast

2011-06-29 Thread Dennis Murphy
Hi: Your object b is a 5 x 12 matrix. The error message says that ets() is expecting a univariate time series as its first argument. Try something like d <- ts(a[, 3], start = c(2005, 1), frequency = 12) fit <- ets(d) and see if that works. Untested since no reproducible example was provided. H

[R] R package Forecast

2011-06-29 Thread nejc bergant
Hello all First of all I must emphasize that I am fascinated about Forecast package. However I have difficulty to execute 'ets' procedure. After I write code: a<-read.table("test.txt", sep="\t", head=T) b<-matrix(a[,3], nrow=5, ncol=12, dimnames=list(c("2005","2006","2007","2008","2009"), c("jan"

Re: [R] Package Snow 0.3-5 hangs on windows 7 (follow-up)

2011-06-27 Thread Martin Valere
Valere Cc: r-help@r-project.org Betreff: Re: [R] Package Snow 0.3-5 hangs on windows 7 Please try R-2.13.0 patched with the most recent snow. We found a bug in R that has been fixed in the meantime. Best, Uwe Ligges On 27.06.2011 10:46, Martin Valere wrote: > Good morning, > > I was usin

Re: [R] Package Snow 0.3-5 hangs on windows 7

2011-06-27 Thread Uwe Ligges
Please try R-2.13.0 patched with the most recent snow. We found a bug in R that has been fixed in the meantime. Best, Uwe Ligges On 27.06.2011 10:46, Martin Valere wrote: Good morning, I was using the packages snow 0.3-3 and snowfall 1.84 with R.10.1 : it is working great ! (Windows 7) S

[R] Package Snow 0.3-5 hangs on windows 7

2011-06-27 Thread Martin Valere
Good morning, I was using the packages snow 0.3-3 and snowfall 1.84 with R.10.1 : it is working great ! (Windows 7) Since I have tried to update my R version (Windows 7). I cannot make the packages snow and snowfall works for parallel processing. I have tried the following version combinations

Re: [R] download R Package for HP-UX ia64 server

2011-06-26 Thread David Winsemius
On Jun 26, 2011, at 1:10 PM, Zhou, Hong wrote: Hi, I am new to R. Is there a R package for HP-UX Itanium 64 bits server available? Questions about obscure Unix systems generally get directed to the r- devel mailing list. I'm assuming you are asking if it is possible to compile R

[R] download R Package for HP-UX ia64 server

2011-06-26 Thread Zhou, Hong
Hi, I am new to R. Is there a R package for HP-UX Itanium 64 bits server available? Thanks very much for your help! Hong Hong Zhou, MS, MIS Senior Systems Analyst Center for Outcomes Research The Children's Hospital of Philadelphia 3535 Market St. Suite 1029 Philadelphia, PA 10104 Tel:

Re: [R] Package warnings

2011-06-22 Thread steven mosher
Thanks all the issue is closed. in this case I had a data element FILE.PARAMETERS = list() the .Rd files created by package.skelton() for data objects had the following for \usage. \usage{data(FILE.PARAMETERS)} I left that as is and CHECK throws a warning. "checking for code/d

Re: [R] Package warnings

2011-06-22 Thread steven mosher
Thanks Duncan, I'll join Dev and ask the questions over there. Steve On Wed, Jun 22, 2011 at 7:19 AM, Duncan Murdoch wrote: > On 11-06-21 11:58 PM, steven mosher wrote: > >> Thanks to all your help I've just finished my first package and I have a >> couple of questions >> >> >> >> I want to su

Re: [R] Package warnings

2011-06-22 Thread Duncan Murdoch
On 11-06-21 11:58 PM, steven mosher wrote: Thanks to all your help I've just finished my first package and I have a couple of questions I want to submit to CRAN but I have 1 warning " checking for code/documentation mismatches ... WARNING Data sets with usage in documentation object 'FI

[R] Package warnings

2011-06-21 Thread steven mosher
Thanks to all your help I've just finished my first package and I have a couple of questions I want to submit to CRAN but I have 1 warning " checking for code/documentation mismatches ... WARNING Data sets with usage in documentation object 'FILE.PARAMETERS' but not in code: FILE.PARAMETE

[R] package VGAM: vglm.fit()

2011-06-16 Thread Martin Spindler
Dear all, I am estimating a bivariate probit model using the package VGAM: fit1 = vglm(cbind(y1, y2) ~ x1+x2, binom2.rho, data=dat, trace=TRUE) I would like to estimate this via the method vglm.fit (in an analogous way as lm.fit for lm or glm.fit for glm). Unfortunately my trials did no

Re: [R] Question about license for redistribution of R package

2011-06-13 Thread Duncan Murdoch
On 11-06-13 1:22 PM, Iyer wrote: Hello, I would like to distribute an R package along with an application. The package is written exclusively in R. Since the package does not make sense outside of the application it does not make sense to submit it to CRAN. I have a question regarding

Re: [R] Question about license for redistribution of R package

2011-06-13 Thread Iyer
> Hello, > > I would like to distribute an R package along with an application. The > package is written exclusively in R. > > Since the package does not make sense outside of the application it does > not make sense to submit it to CRAN. > > I have a question regardin

Re: [R] Inspecting C code in an R package

2011-06-11 Thread Barry Rowlingson
On Sat, Jun 11, 2011 at 5:31 PM, Layman123 wrote: > Thank you! Of course, I will read the posting guidelines. A subscriber helped > me via e-mail telling me to use the grep-command, that is type in: grep > "somename" *.c. For Windows users it's: findstr "somename" *.c. The problem here is that t

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