[R] Adding new points to a metaMDS ordination (vegan pkg)

of years ago, mainly to identify unstable points with alternative locations, but that produced nothing that could be called user-friendly. Code is welcome. BTW, it seems that you didn't use squared chord distance, but just chord distance. Best wishes, Jari Oksanen -- Jari Oksanen [EMAIL PROTECTED

[R] cca and cca.predict in vegan-what sort of prediction is possible

, for instance) or some fancier methods. Please note that this kind of specific questions should not be sent to the R News, but to more specialized mailing lists or to the package author directly (although the author was not reading email in July). Best wishes, Jari Oksanen

Re: [R] Error using mgcv package

. There may be other problems, but this probably fixes tha one you reported above. cheers, jari oksanen And after deleting df's model.gam - gam(formula = RES ~ CAT01+s(NUM01)+CAT02+CAT03+s(NUM02)+CAT04+ + CAT05+s(NUM03)+CAT06+CAT07+s(NUM04)+CAT08+s(NUM05)+CAT09+ + CAT10+s(NUM06)+CAT11+NUM07+CAT12

Re: [R] correspondence analysis

or function may give you their squares, a.k.a. eigenvalues. Moreover, the sign is arbitrary so that negative and positive scores may be switched between programs. I hope this helps, Jari Oksanen __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch

Re: [R] biplot package

to no real problem, but a reason of many new problems.) Somebody already promised to write a biplot method for rda in vegan (howdy Gav), but I haven't heard of this for a long time. It would be nice to be able to have this kind of interface for your enhanced code, too. cheers, jari oksanen

Re: [R] R2 always increases as variables are added?

. Cheers, Jari Oksanen __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.

[R] step in Sweave

without message(). I bet that won't happen, though. Cheers, Jari Oksanen -- Jari Oksanen [EMAIL PROTECTED] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org

Re: [R] dist label names

, rownames(mod$points)) I hope this helps. However, it is new to me that Euclidean distance is an appropritae metric for governance indicators (but none of my business). Cheers, jari oksanen __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch

Re: [R] Help about princomp

, and FALSE for those ignored: pc - prcomp(x[keep,]) predict(pc, newdata=x) cheers, Jari Oksanen __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting

Re: [R] Abundance data ordination in R

something like handling zeros as missing values of various degrees(!), but my decency prohibits me to write about these methods. cheers, jari oksanen __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read

Re: [R] about hcluster

. cheers, Jari Oksanen __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.

[R] distance metrics

- function(dist, i, j) { dist[idx(i, j, attr(dist, Size))] } which can be used with fewer bracket types: getidx(dist, 2417, 1105). cheers, jari oksanen __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read

Re: [R] RDA and trend surface regression

polynomial conditions (partial out polynomial effects in Canoco language). In that case it may make sense to use quadratic (or polynomial) constraints or conditions. cheers, Jari Oksanen __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch

[R] RDA and trend surface regression

, then it is easier and better (numerically) to use poly(): rda(Helling ~ poly(x, 3) + poly(y, 3)) Another issue is that in my opinion using polynomial constraints is an Extremely Bad Idea(TM). cheers, Jari Oksanen __ R-help@stat.math.ethz.ch mailing

Re: [R] something missing in summary()

, because it varies so little among variables. The R-help message cited above and its follow-ups suggest some ways of locally modifying the code and maintaining the modifications over the upgrades of R. Best wishes, Jari Oksanen __ R-help

[R] isoMDS vs. other non-metric non-R routines

' is rather slack, and 'maxit' fairly low, since (speculation) the function was written a long time ago when computer were slow, but if you have something better than 75MHz i486, you can try with other values. I have used isoMDS quite a lot, and I have had good experience. Cheers, Jari Oksanen

[R] isoMDS vs. other non-metric non-R routines

me if my interpretation was wrong). I can imagine cases where non-metric solution works badly, in particular with small data sets. However, that should concern all implementations similarly, and probably it should be visible in Shepard plots (see isoMDS help). Cheers, Jari Oksanen

[R] isoMDS - high stress value and strange configuration

of vegan, but you can do that quite well by any other way. Another point (which does not matter here so much) is that isoMDS multiplies stress by 100, so that your stress of 6 would corresponde 0.06 in some other software (assuming they use the same stress). cheers, jari oksanen -- Jari Oksanen

Re: [R] question about capscale (vegan)

: permutest.cca(object, step, ...) 2: anova.cca(my.cap) 1: anova(my.cap) ), but anova.cca doesn't seem to handle situations where there isn't an unconstrained component. I've CC'd Jari Oksanen, the author of vegan to insure he sees this. Dear y'all, I agree with this analysis: you have no residual

Re: [R] MDS with missing data?

On Thu, 2006-06-15 at 07:13 +0300, Jari Oksanen wrote: 1) use nonmetric/gradient descent MDS which seems to allow missing data, or Not the isoMDS function in MASS. if N(N-1) is a problem, then nonmetric MDS may not be the solution. Sorry for the wrong information: isoMDS does handle

Re: [R] 2 Courses Near You - (1) Introduction to R/S+ programming: Microarrays Analysis and Bioconductor, (2) R/Splus Fundamentals and Programming Techniques

is closest (OUL - BWI 12h55min), but Boston and Chicago are not much further away (OUL - BOS 14h00min, OUL-CHI 14h15min). cheers, jari oksanen Probably some football related metric: FIFA WM takes place in Dortmund and commercials say something like the world is our guest ... Now, let's

Re: [R] MDS with missing data?

Dear Context Grey, On 15 Jun 2006, at 6:42, context grey wrote: I will be applying MDS (actually Isomap) to make a psychological concept map of the similarities between N concepts. So actually, how do you do isomap? RSiteSearch gave me one hit of isomap. I only ask, because I've

Re: [R] Error message with nmds

://stat.ethz.ch/pipermail/r-help/2006-April/092598.html and answers. You may also use RSiteSearch with keyword isoMDS to find other (and older) threads. cheers, jari oksanen -- Jari Oksanen -- Dept Biology, Univ Oulu, 90014 Oulu, Finland email [EMAIL PROTECTED], homepage http://cc.oulu.fi/~jarioksa

Re: [R] isoMDS and 0 distances

was to drop duplicates, but then there still is a weighting issue, and isoMDS does not have weights argument. cheers, jari oksanen -- Jari Oksanen -- Dept Biology, Univ Oulu, 90014 Oulu, Finland email [EMAIL PROTECTED], homepage http://cc.oulu.fi/~jarioksa

Re: [R] isoMDS and 0 distances

OR IN WRITING, IS C PROHIBITED WITHOUT WRITTEN PRERMISSION OF C BELL LABORATORIES. CKYST-2A AUGUST, 1977 cheers, jari oksanen -- Jari Oksanen -- Biologian laitos, Oulun yliopisto, 90014 Oulu sposti [EMAIL PROTECTED], kotisivu http://cc.oulu.fi/~jarioksa

Re: [R] transparent background for PDF

other programmes than R. This experience is from Linux Mac (pdf) and PP in Mac (never tried that with PowerPoint on Linux...). cheers, jari oksanen -- Jari Oksanen, Oulu, Finland __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman

Re: [R] Ordination of feature film data question

data in movies. cheers, jari oksanen -- Jari Oksanen [EMAIL PROTECTED] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html

Re: [R] suppress tick labels

? Looking at ?axis suggest that you could set labels=FALSE to suppress those. It indeed seems to work, although you get a warning for each omitted tick label (but you must get used to warnings if you plot()). Try: plot(rnorm(20), labels=FALSE) cheers, jari oksanen -- Jari Oksanen, Oulu

Re: [R] modifying code in contributed libraries - changes from versions 1.* to 2.*

read the posting guide! http://www.R-project.org/posting-guide.html -- Jari Oksanen, Oulu, Finland __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting

Re: [R] open source and R

session. That really ruins all decent commenting: comments may be misplaced, and the default formatting of comments is really bad in ESS. So my choice is to uncomment R code, but comment C (and Fortran). cheers, jari oksanen __ R-help@stat.math.ethz.ch

Re: [R] voronoi

, jari oksanen 2005/11/13, Robert [EMAIL PROTECTED]: Is there any pure r code to do delaunay or voronoi diagrams? Thanks! - [[alternative HTML version deleted]] __ R-help@stat.math.ethz.ch mailing list

Re: [R] error in rowSums:'x' must be numeric

user (not me: I'm no more innocent) would expect R cope with that kind of input format. cheers, jari oksanen -- Jari Oksanen -- Dept Biology, Univ Oulu, 90014 Oulu, Finland email [EMAIL PROTECTED], homepage http://cc.oulu.fi/~jarioksa/ __ R-help

Re: [R] quadratic form

.) cheers, jari oksanen -- Jari Oksanen, Oulu, Finland __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html

[R] Forum of Mac questions (Was: loading packages - mac user)

that sounds like being unintelligible to non-programmers? cheers, jari oksanen -- Jari Oksanen [EMAIL PROTECTED] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org

Re: [R] varimax rotation difference between R and SPSS

, it seems that the raw solutions are identical. cheers, jari oksanen -- Jari Oksanen -- Dept Biology, Univ Oulu, 90014 Oulu, Finland __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http

Re: [R] Under-dispersion - a stats question?

' -- in a collection) is underdispersed to Poisson, and for a good reason. Even there I'd play safe and use poisson() instead of underdispersed quasipoisson(). cheers, jari oksanen -- Jari Oksanen -- Dept Biology, Univ Oulu, 90014 Oulu, Finland Ph. +358 8 5531526, cell +358 40 5136529, fax +358 8

Re: [R] Compare two distance matrices

giving compliant results. For Mantel tests you may need ade4 (or some other package that has the same test). cheers, jari oksanen -- Jari Oksanen -- Dept Biology, Univ Oulu, 90014 Oulu, Finland email [EMAIL PROTECTED], homepage http://cc.oulu.fi/~jarioksa

Re: [R] Graphical presentation of logistic regression

decided to educate them (I'm not an ESA member, so I wouldn't be educated: therefore 'them' instead of 'us'). The ESA bulletin will be influential in manuscript submitted to the Society journals in the future, and the time for action is now. cheers, jari oksanen -- Jari Oksanen -- Dept Biology, Univ

Re: [R] Document clustering for R

write it for you in C, but I don't think that is necessary). cheers, jari oksanen __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html

Re: [R] vectors of different length in a matrix

Horn index used in cases where you don't have these identities -- specifically species names. cheers, jari oksanen -- Jari Oksanen -- Dept Biology, Univ Oulu, 90014 Oulu, Finland email [EMAIL PROTECTED], homepage http://cc.oulu.fi/~jarioksa/ __ R-help

Re: [R] vectors of different length in a matrix

On Mon, 2005-08-22 at 16:13 +0300, Jari Oksanen wrote: On Mon, 2005-08-22 at 08:56 -0400, Duncan Murdoch wrote: On 8/22/2005 8:45 AM, Marten Winter wrote: HI! I?ve 3 vectors of different length (a,b,c) and want to arrange them in a matrix a,b,c as rows and the figures

Re: [R] invalid 'mode' of argument?

zeros. PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html cheers, jari oksanen -- Jari Oksanen -- Dept Biology, Univ Oulu, 90014 Oulu, Finland email [EMAIL PROTECTED], homepage http://cc.oulu.fi/~jarioksa/ __ R-help

Re: [R] INDVAL and mvpart

Agnieszka, Package 'mvpart' is documented. In this case, ?rpart.object explains *where* in the rpart object is the membership vector. cheers, jari oksanen On Mon, 2005-08-08 at 16:02 +0200, [EMAIL PROTECTED] wrote: Hi, I'd like to perform Dufrene-Legendre Indicator Species Analysis

Re: [R] prcomp eigenvalues

Finally, some popular programs in ecology (your affiliation) use proportional eigenvalues which you can get with: ev/sum(ev) cheers, jari oksanen -- Jari Oksanen -- Dept Biology, Univ Oulu, 90014 Oulu, Finland email [EMAIL PROTECTED], homepage http://cc.oulu.fi/~jarioksa

Re: [R] ellipse -confidence interval

there). Some people are hypersensitive to principle components (beware). cheers, jari oksanen -- Jari Oksanen, Oulu, Finland __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R

Re: [R] plot(corresp(data)...)

)) It seems to give a legible plot with your data (that you named data, a bad idea). At least in my screen. cheers, jari oksanen -- Jari Oksanen [EMAIL PROTECTED] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do

Re: [R] plot(corresp(data)...)

with the same name) after you get data where you have more than two axes. These figures easily get illegible, though. cheers (again), jari oksanen -- Jari Oksanen [EMAIL PROTECTED] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r

Re: [R] Uses of isoMDS()

that things will become clear. And take care that Kruskal, too, is in your local library when MASS arrives: the book does not tell you which of Kruskal's alternative stresses is used, but you got to compare the equation against Kruskal's. cheers, jari oksanen

Re: [R] A long digression on packages

a discussion in a certain forum, you shall not divert it to another forum where it may be hidden by most readers, perhaps even by the originator of the thread. cheers, jari oksanen -- Jari Oksanen, Oulu, Finland __ R-help@stat.math.ethz.ch mailing

Re: [R] R annoyances

, keep it like it used to be... cheers, jari oksanen -- Jari Oksanen, Oulu, Finland __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html

Re: [R] cmdscale: missing dimnames in R 2.1.0

this is fixed. cheers, jari oksanen -- Jari Oksanen [EMAIL PROTECTED] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html

Re: [R] tcl/tk problem

probably have some installation to do. You can find F For Mac OS X FAQ from the Help entry of the upper panel in R.app or through CRAN. cheers, jari oksanen -- Jari Oksanen [EMAIL PROTECTED] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch

Re: [R] Pca loading plot lables

$loadings, rownames(pr$loadings), xpd=TRUE) abline(h=0); abline(v=0) If you really want to have Axis 2 as horizontal, then you must replace all pr$loadings pieces with pr$loadings[,2:1]. cheers, jari oksanen -- Jari Oksanen [EMAIL PROTECTED] __ R-help

Re: [R] results from sammon()

help. cheers, jari oksanen -- Jari Oksanen [EMAIL PROTECTED] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html

Re: [R] results from sammon()

iters: 0.07754, magic = 0.500 stress after 50 iters: 0.07710, magic = 0.500 stress after 60 iters: 0.07681, magic = 0.500 stress after 70 iters: 0.07663, magic = 0.500 stress after 80 iters: 0.07653, magic = 0.500 cheers, jari oksanen -- Jari Oksanen [EMAIL PROTECTED

Re: [R] R2.0.1 for Mac OS X 10.3 problem

Thomas Yee's VGAM and then removed the package.) cheers, jari oksanen -- Jari Oksanen -- Dept Biology, Univ Oulu, 90014 Oulu, Finland email [EMAIL PROTECTED], homepage http://cc.oulu.fi/~jarioksa/ __ R-help@stat.math.ethz.ch mailing list https

Re: [R] Very Slow Gower Similarity Function

is the problem, but I couldn't figure out how to get rid of them. cheers, jari oksanen -- Jari Oksanen, Oulu, Finland __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R

Re: [R] Very Slow Gower Similarity Function

On 18 Apr 2005, at 20:36, Anon. wrote: Jari Oksanen wrote: On 18 Apr 2005, at 19:10, Tyler Smith wrote: Hello, I am a relatively new user of R. I have written a basic function to calculate the Gower similarity function. I was motivated to do so partly as an excercise in learning R, and partly

Re: [R] Factor Analysis Biplot

) cheers, J -- Jari Oksanen -- Dept Biology, Univ Oulu, 90014 Oulu, Finland email [EMAIL PROTECTED], homepage http://cc.oulu.fi/~jarioksa/ __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting

Re: [R] R binaries for UMBUTU Linux?

in version naming which may lead to conflicts in upgrades, but I think this is OK with R). So you may get the latest Debian (testing) packages -- as soon as they get through the jungle of dependencies and appear in Debian. cheers, jari oksanen -- Jari Oksanen -- Dept Biology, Univ Oulu, 90014 Oulu

Re: [R] weird results w/ prcomp-princomp

oksanen -- Jari Oksanen -- Dept Biology, Univ Oulu, 90014 Oulu, Finland Ph. +358 8 5531526, cell +358 40 5136529, fax +358 8 5531061 email [EMAIL PROTECTED], homepage http://cc.oulu.fi/~jarioksa/ __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch

Re: [R] two methods for regression, two different results

5.551115e-17 But, of course, fitted values are not equal, since you fit the mod2 to the residuals after removing the effect of x... cheers, jari oksanen -- Jari Oksanen [EMAIL PROTECTED] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch

Re: [R] Principle Component Analysis in R

because people with Factor Analysis background expect this. However, I would be worried if I got results like this, and would not use Princip*al* Components at all, since none of the components seems to be any more principal than others. Wouldn't original data do? cheers, jari oksanen -- Jari

Re: [R] How to do such MDS in R

the software into R, but I think the license does not allow this. The hardest bit would be to change the output into R. I suggest you dig up SINDSCAL somewhere -- it could be in netlib -- and compile it yourself. Gnu g77 is quite OK. cheers, jari oksanen -- Jari Oksanen, Oulu, Finland

Re: [R] Significance of Principal Coordinates

a dimension that you must explain away in the text. Wouldn't that be a sufficient solution? cheers, jari oksanen -- Jari Oksanen [EMAIL PROTECTED] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting

Re: [R] Multidimensional Scaling (MDS) in R

(dis) plot(ord$points, asp = 1, type=n) text(ord$points, rownames(ord$points) The posting guide tells you to make package specific questions to the package author directly. In this case, the package author does not read R-News. cheers, jari oksanen On 8 Mar 2005, at 19:43, Isaac Waisberg wrote

Re: [R] Reconstructing Datasets

). cheers, jari oksanen -- Jari Oksanen [EMAIL PROTECTED] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html

Re: [R] Reconstructing Datasets

On Wed, 2005-03-02 at 08:30 +0200, Jari Oksanen wrote: On Tue, 2005-03-01 at 20:30 +, Laura Quinn wrote: Hi, Is it possible to recreate smoothed data sets in R, by performing a PCA and then reconstructing a data set from say the first 2/3 EOFs? I've had a look in the help pages

Re: [R] How to set up number of prin comp.

with prcomp. I think I'll write functions as.prcomp.princomp and as.princomp.prcomp someday. cheers, jari oksanen -- Jari Oksanen [EMAIL PROTECTED] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read

Re: [R] eigen vector question

oksanen -- Jari Oksanen [EMAIL PROTECTED] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html

Re: [R] R + MacOSX + Emacs(XEmacs) + ESS

without X11. ESS installs quite smoothly. Depending on your configuration, you may have to use ESC for Meta instead of Alt of some other systems. So start R in ESS using ESC-R. (The emacs that comes with MacOS X also is GNU Emacs, but works only within terminal window.) cheers, jari oksanen -- Jari

Re: [R] installing package hier.part on Mac OSX

. cheers, jari oksanen On Wed, 9 Feb 2005, Theresa Talley wrote: Hi- I've been trying to install the hier.part package on my mac (OSX 10.3.7) and it is not working for some reason. I am downloading the package source called : hier.part_1.0.tar.gz. When I try to auto install from

Re: [R] Failure of update.packages()

Debian so that people could use the non-devel piece of R only? cheers, jari oksanen -- Jari Oksanen [EMAIL PROTECTED] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R

Re: [R] Failure of update.packages()

On 10 Feb 2005, at 19:26, Peter Dalgaard wrote: [EMAIL PROTECTED] writes: Quoting Jari Oksanen [EMAIL PROTECTED]: On Thu, 2005-02-10 at 13:52 +0100, Peter Dalgaard wrote: I M S White [EMAIL PROTECTED] writes: Can anyone explain why with latest version of R (2.0.1) on FC3, installed from R-2.0.1-0

Re: [R] randomisation

it). The Mac binary is not available at CRAN since the whole Mac binary package system seems to be dysfunctional (there is nothing after Jan 19, 2005). cheers, jari oksanen __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help

Re: [R] Problem installing Hmisc (more info)

' to be in a different place that I had it. For instance, Darwin's Fink installs stuff in a unique place called /sw. Perhaps that's the problem? However, ideally MacOS software should work 'jus anywhere' (and 'just work') like they say in ads. cheers, jari oksanen -- Jari Oksanen, Oulu, Finland

Re: [R] MacOS X and vectorized files (emf, wmf,...)

in pdf which is vectorized graphic format native to MacOS X. Further, dev.copy2eps() work normally, as do postcript() and pdf() devices. See appropriate help pages. Native MS Windows formats (such as wmf) may not work, but who needs them? cheers, jari oksanen -- Jari Oksanen [EMAIL PROTECTED

Re: [R] Bootstrapped eigenvector

cor = TRUE to princomp. Another issue is whether you should use this method. Opinions may be divided here, but I'll let that to the proper Statistician to comment on. Best wishes, Jari Oksanen -- Jari Oksanen [EMAIL PROTECTED] __ R-help

Re: [R] printing PCA scores

for. cheers, jari oksanen -- Jari Oksanen [EMAIL PROTECTED] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html

Re: [R] Switching to Mac, suggestions? (was switching to linux)

than in R. By the way, Ubuntu GNU/Linux works nicely in Mac, with blas who knows about the vector processor in G4. cheers, jazza -- Jari Oksanen, Oulu, Finland __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read

Re: [R] Switching to Mac, suggestions? (was switching to linux)

in Mac is that graphics are superb in Mac. The default plot (quartz) is small but sharp. It used to scale instantly when you changed its size, but this deteriorated in 2.0 series. cheers, jari oksanen -- Jari Oksanen [EMAIL PROTECTED] __ [EMAIL PROTECTED

Re: [R] How to circumvent negative eigenvalues in the capscale function

need more memory or an operating system with better memory handling. You may try with some Linux live-cd (such as Quantian) where you can use R in Linux without installing Linux in your hard drive. cheers, jari oksanen -- Jari Oksanen -- Dept Biology, Univ Oulu, 90014 Oulu, Finland email [EMAIL

Re: [R] Importing vector graphics into R

/ DLL interface 108 (build Oct 17 2003 - release build) : Copyright (C) 1993 - 2003 Wolfgang Glunz cheers, jari oksanen -- Jari Oksanen [EMAIL PROTECTED] __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read

RE: [R] How about a mascot for R?

Verlag, Stuttgart The English translation is The Snouters: Form and life of the Rhinogrades . The University of Chicago Press (1981). Google will found more info for those who don't have acces to these books. cheers, jaRi oksanen -- Jari Oksanen [EMAIL PROTECTED

RE: [R] How about a mascot for R?

On Wed, 2004-12-08 at 17:01, Jari Oksanen wrote: I just wait for someone jumping off and saying this is off-topic and you should stop posting to this list -- and I'm afraid it could happen just at this point. Just to make it clear and to avoid misunderstanding: I was trying to reach

RE: [R] How about a mascot for R?

On Wed, 2004-12-08 at 17:01, Jari Oksanen wrote: I just wait for someone jumping off and saying this is off-topic and you should stop posting to this list -- and I'm afraid it could happen just at this point. Just to make it clear and to avoid misunderstanding: I was trying to reach

Re: [R] Gam() function in R

this is done in mgcv:::gam (gam:::gam has another set of tools and philosophy). If you happened to use gam:::gam, then you have to look at another explanation. cheers, jari oksanen From: Liaw, Andy [mailto:[EMAIL PROTECTED] Sent: Sunday, December 05, 2004 11:34 PM To: 'Janice Tse'; [EMAIL

Re: [R] How about a mascot for R?

as a mascot. Naturally, this is none of my business, so you should not let this message influence your opinion (it wouldn't anyway). cheers, jari oksanen -- Jari Oksanen, Oulu, Finland __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r

Re: [R] Protocol for answering basic questions

discussion instead of a public call to a private discussion. cheers, jari oksanen -- Jari Oksanen -- Oulu, Finland. But, Mousie, thou art no thy lane, In proving foresight may be vain; The best-laid schemes o' mice an 'men, Gang aft agley, An'lea'e us nought but grief an' pain, For promis'd joy

Re: [R] How about a mascot for R?

/mascot.html I think this is a copyright picture, and it cannot be used freely as a mascot (and will disappear soon from this address). cheers, jari oksanen -- Jari Oksanen, Oulu, Finland __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo

Re: [R] How about a mascot for R?

. I've never liked movies about ecologically non-sustainable and energetically impossible life forms. The current sub-theme brings to my mind something completely different: http://www.hundland.com/posters/t/TheTalentedMr.Ripley.jpg. cheers, jari o. -- Jari Oksanen [EMAIL PROTECTED

Re: [R] can't install r package on debian due to linker problem

stable R version 2.0.1 gcc 2.95.4-14 g77 2.95.4-14 binutils 2.12.90.0.1-4 cheers, jari oksanen -- Jari Oksanen [EMAIL PROTECTED] __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http

Re: [R] step.gam

/lab5.html. You may find some useful hints here, as Dave is partial to the traditional S-plus gam as well. cheers, jari oksanen -- Jari Oksanen -- Dept Biology, Univ Oulu, 90014 Oulu, Finland email [EMAIL PROTECTED], homepage http://cc.oulu.fi/~jarioksa

Re: [R] Protocol for answering basic questions

or a Forum (these are words I've seen, but I wouldn't visit places like this, talking about my g-g-generation). cheers, jari oksanen -- Jari Oksanen, Oulu, Finland __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read

Re: [R] depth constrained cluster

onedimensional or chronologically constrained clustering and 2dim or spatially constrained clustering. cheers, jari oksanen -- Jari Oksanen [EMAIL PROTECTED] __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read

Re: [R] A basic question

oksanen -- Jari Oksanen [EMAIL PROTECTED] __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html

Re: [R] How to insert one element into a vector?

, and I'm happy that Peter Dalgaard didn't know that 'append' inserts: it gives some hope to us ordinary mortals. cheers, jazza -- Jari Oksanen [EMAIL PROTECTED] __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read

Re: [R] The hidden costs of GPL software?

useful quite easily. All of us who have had the frustration of searching for a forgotten function would be grateful. You mean SOM? -- Jari Oksanen [EMAIL PROTECTED] __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do

Re: [R] Running R from CD?

in the help browser window. Go to chapter 7. Some Suggestions for Instructors which tells you how to make a live CD of R in Windows. I haven't tried this, since I don't have Windows, but I sure will when I got to be an instructor in a Windows class. cheers, jari oksanen -- Jari Oksanen [EMAIL

Re: [R] CDs for R?

On Wed, 2004-11-17 at 16:54, Dirk Eddelbuettel wrote: On Wed, Nov 17, 2004 at 08:25:54AM +0200, Jari Oksanen wrote: On 16 Nov 2004, at 23:39, (Ted Harding) wrote: Now comes my suggestion to CRAN maintainer: this all would be easier, if you would produce a CD image file ('iso

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