[R] Im(z) -

2004-12-21 Thread Robin Hankin
Hello everybody If R a - 1i+(1:10) I would like to say R Im(a) - 1:10 R a [1] 1+ 1i 2+ 2i 3+ 3i 4+ 4i 5+ 5i 6+ 6i 7+ 7i 8+ 8i 9+ 9i 10+10i But there does not seem to be a Im- function. How about this: Im- - function(x,value){ if(is.complex(value)){stop(value must be real)}

[R] about colnames

2004-12-21 Thread
Hello sir: If there's a data frame(with name df): a b c d e f 1 10 12 20 30 100 2 3 15 16 40 200 .. If I wanna change the last 3 colunm namesd e f respectively into x y zrespectively,the following is what I do: colnames(df[4:6])-c(x,y,z) But no change to the colnames of df. And if I

RE: [R] about colnames

2004-12-21 Thread michael watson \(IAH-C\)
Try colnames(df)[4:6] - c(x,y,z) -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of [EMAIL PROTECTED] Sent: 21 December 2004 09:45 To: [EMAIL PROTECTED] Subject: [R] about colnames Hello sir: If there's a data frame(with name df): a b c d e f 1 10

[R] (no subject)

2004-12-21 Thread NICOLAS DEIG
hello, I am encoutering problems with a function of R. The function is for classification trees. I am working on datas of this kind: X1X2X3X4X5 class 1 2.092 1.902 2.779 2.944 1.946 1 for 200 observations and 4 differents classes. What i would like to do is

[R] link to a vignette/overview document in .Rd file?

2004-12-21 Thread David Firth
Is there a reliable way to link to a vignette or other overview document, which has been included in the inst/doc directory of a source package, within a package help file in Rd format? or maybe link to an index of such documents? David Professor David Firth Dept of Statistics University of

Re: Re: [R] muliple plots with pairs (matrix of scatter plots)

2004-12-21 Thread Landini Massimiliano
On Tue, 21 Dec 2004 12:47:44 +1300, you wrote: |=[:o) Hi |=[:o) |=[:o) |=[:o) Uwe Ligges wrote: |=[:o) Tiago R Magalhaes wrote: |=[:o) |=[:o) I am trying to make a graph with 4 scatter matrixes plots and couldn't |=[:o) do it. While trying to find a solution for this I also came

[R] No Graphics Window, Mandrake 10.1

2004-12-21 Thread Rau, Roland
Dear all, I installed Mandrakelinux 10.1 (community) on my notebook. Before, I used Mandrakelinux 9.1 (and later 10.0 as an update). Now I wanted to compile, as before, R. In the beginning, nothing worked but it seemed to be the problem of GCC 3.4.1 which was shipped with my distribution. After

RE: [R] Increased execution speed of R2.0.1?

2004-12-21 Thread Rau, Roland
Dear R-Community, [EMAIL PROTECTED] wrote: tree). There used to be an alpha verision of byte-compiler for R - is it now included into official version of R? Is this byte-compiler publicly available (even if it is only an alpha-version)? Thanks, Roland I was searching the R-help archives.

[R] Creating a vector of colours that are as different from one another as possible

2004-12-21 Thread michael watson \(IAH-C\)
Hi I want to create a vector of colors that are as different from one another as possible. ?rainbow states Conceptually, all of these functions actually use (parts of) a line cut out of the 3-dimensional color space This suggests to me that the resulting colors are all placed on this line

Re: [R] Increased execution speed of R2.0.1?

2004-12-21 Thread M.Kondrin
Rau, Roland wrote: Is this byte-compiler publicly available (even if it is only an alpha-version)? Hello! Compiler is on the home page of Luke Tierney http://www.stat.uiowa.edu/~luke/R/compiler/ Good luck! __ [EMAIL PROTECTED] mailing list

[R] aggregate and median

2004-12-21 Thread Philippe Hupé
I am trying to use the function aggregate with the median function but I get the following error: Error in FUN(X[[1]], ...) : Argument INDEX When I replace median by mean, it works perfectly Can someone tell me where the problem comes from? Thx I am running R 2.0.0 on SunOS 5.9 -- Philippe Hupé

RE: [R] No Graphics Window, Mandrake 10.1

2004-12-21 Thread Liaw, Andy
You might need to install devel package(s) for X, which contain header files that are needed. When configure finished, do you see `X11' among the final output? If not, that may very well be the problem. Andy From: Rau, Roland Dear all, I installed Mandrakelinux 10.1 (community) on my

[R] R code for var-cov matrix given variances and correlations

2004-12-21 Thread Haynes, Maurice (NIH/NICHD)
Dear list members, Where can I find code for computing the p*p variance-covariance matrix given a vector of p variances (ordered varA, varB, ..., varp) and a vector of all possible correlations (ordered corAB, corAC, ..., corp-1,p)? I know that the covariance between 2 variables is equal to

Re: [R] aggregate and median

2004-12-21 Thread Petr Pikal
On 21 Dec 2004 at 12:46, Philippe Hup wrote: I am trying to use the function aggregate with the median function but I get the following error: Error in FUN(X[[1]], ...) : Argument INDEX When I replace median by mean, it works perfectly Hi Philippe I suppose that you have some typo in

RE: [R] Creating a vector of colours that are as different from

2004-12-21 Thread Ted Harding
On 21-Dec-04 michael watson \(IAH-C\) wrote: Hi I want to create a vector of colors that are as different from one another as possible. ?rainbow states Conceptually, all of these functions actually use (parts of) a line cut out of the 3-dimensional color space This suggests to me

[R] help with limma

2004-12-21 Thread r . ghezzo
Follow up on my previous e-mail I am using Affys nzwC etc. are single columns vectors length 12000 then nzw,akr,bas are 12000 by 6 matrices Thanks again for any help, now I resend the e-mail to Gordon with the correct address I hope. Heberto Ghezzo McGill - Canada

Re: [R] How to display each symbol in a different color using plot with summary.formula.reverse

2004-12-21 Thread Frank E Harrell Jr
Greg Blevins wrote: Dear R Masters, I have searched high and low (the help archives and my various R reference material and help files) for a solution to what appears to me to be quite a simple problem. In the following syntax, variable n10 has three levels. I would like the symbols that

Re: [R] R code for var-cov matrix given variances and correlations

2004-12-21 Thread Peter Dalgaard
Haynes, Maurice (NIH/NICHD) [EMAIL PROTECTED] writes: If the vector of variances were var.vec - c(14, 12, 7) and the vector of correlations were cor.vec - c(.4, .2, .5), then the vector of covariances would be: covAB(c(.4, .2, .5),c(14, 14, 12), c(12, 7, 7)) [1] 5.184593 1.979899

Re: [R] Creating a vector of colours that are as different from one another as possible

2004-12-21 Thread Petr Pikal
On 21 Dec 2004 at 11:05, michael watson (IAH-C) wrote: Hi I want to create a vector of colors that are as different from one another as possible. ?rainbow states Conceptually, all of these functions actually use (parts of) a line cut out of the 3-dimensional color space This

Re: [R] R code for var-cov matrix given variances and correlations

2004-12-21 Thread David Firth
On 21 Dec, 2004, at 13:09, Haynes, Maurice (NIH/NICHD) wrote: Dear list members, Where can I find code for computing the p*p variance-covariance matrix given a vector of p variances (ordered varA, varB, ..., varp) and a vector of all possible correlations (ordered corAB, corAC, ..., corp-1,p)?

RE: [R] R code for var-cov matrix given variances and correlatio

2004-12-21 Thread Ted Harding
On 21-Dec-04 Haynes, Maurice (NIH/NICHD) wrote: Dear list members, Where can I find code for computing the p*p variance-covariance matrix given a vector of p variances (ordered varA, varB, ..., varp) and a vector of all possible correlations (ordered corAB, corAC, ..., corp-1,p)? [...]

[R] RMySQL_0.5.5 / SUSE9.2

2004-12-21 Thread christian schulz
Hi, where is my mistake? i have done follow comand-lines. export PKG_LIBS=-L/usr/lib/myslq export PKG_CPPFLAGS=-I/usr/include/mysql R CMD INSTALL RMySQL_0.5-5.tar.gz i'm using R-2.0.1 , suse 9.2, 5.0.0-alpha-standard , and after a succefuel compilaition i get when im type in R

Re: [R] RMySQL_0.5.5 / SUSE9.2

2004-12-21 Thread David James
Hi, I'm not sure where is/are your mistake(s). But you could try finding whether you installed the MySQL shared libraries (as of 4.1.8 there are separate RPMs for these), and/or whether you need to add to your LD_LIBRARY_PATH the directory where these reside. Regards, -- David christian

[R] R COCOA- Mac users

2004-12-21 Thread Naji
Hi all, I've downloaded http://cran.cict.fr/bin/macosx/R-2.0.1.dmg Installed all the packages (except Aqua) (no error message occured) In my application folder, I find R only and I'm having the following message when processing R : Error in rm(rlibs) : can't remove variables from base

[R] Need Parallel R help

2004-12-21 Thread Anne Shelton
I have installed Parallel R on a LINUX Cluster and I am trying to initiate the Parallel engine function in pR but I am receiving this error Error in namespaceExport(ns, exports) : undefined exports: fixPre1.8 StartPE(2) chr [1:2]

Re: [R] Creating a vector of colours that are as different from one another as possible

2004-12-21 Thread Thomas Lumley
On Tue, 21 Dec 2004, michael watson (IAH-C) wrote: Conceptually I guess what I want is colors from a 3D polygon in 3D colour space, where the number of vertices in the polygon is n, resulting in a color palette where the colors are all quite different from one another. Is this possible or am I

Re: [R] R code for var-cov matrix given variances and correlations

2004-12-21 Thread Martin Maechler
PD == Peter Dalgaard [EMAIL PROTECTED] on 21 Dec 2004 14:34:59 +0100 writes: PD Haynes, Maurice (NIH/NICHD) [EMAIL PROTECTED] writes: If the vector of variances were var.vec - c(14, 12, 7) and the vector of correlations were cor.vec - c(.4, .2, .5), then the

Re: [R] erro in SVM (packsge e1071)

2004-12-21 Thread jmoreira
With lm it works. With ppr and nnet it gives exactly the same error as in svm. I did: lm(Duracao ~ ., data= orig.data[1:874,]) ppr(Duracao ~ ., nterms=3, data=orig.data[1:874,], na.action=na.omit, max.terms=6, optlevel=3, sm.method='supsmu', bass=5, span=3/10) nnet(Duracao ~ .,

Re: [R] hang-up during nlme call

2004-12-21 Thread JJ
Excellent Gabor. Thanks. I had seen the withCallingHandlers function, but I did not understand how it was to be used. Thanks for the example. John __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the

Re: [R] Creating a vector of colours that are as different from

2004-12-21 Thread Spencer Graves
There should be a caveat with psycho-visual experimentation: Tufte (1983, p. 183) says that 5-10 percent of viewers are color deficient or color blind. He (pp. 153-154) argues strongly against color puzzles that look pretty but are extremely difficult to decode. He says, Shades of gray

[R] lm regression: estimate of a categorical variable without being broken into levels

2004-12-21 Thread avneet singh
Hello: I am new to R and am going through the growing pains, wonder if you could help alleviate some. I wished to find the estimate for a categorical variable without it being broken into levels but dont know how to. if I use the following example: $data(iris) $g=lm(Sepal.Length~.,iris)

[R] scheduling R tasks under windows

2004-12-21 Thread Mikkel Grum
I'm trying to schedule R tasks in Windows Server 2003. I can run the following from the DOS prompt without any difficulty: c:\Reportsc:\r\rw2001\bin\rterm.exe --no-restore --no-save test.R test.out where test.r has two lines: library(tools); Sweave(rlr.Rnw). When I try to run the same from the

Re: [R] lm regression: estimate of a categorical variable without being broken into levels

2004-12-21 Thread Achim Zeileis
On Tue, 21 Dec 2004 12:06:47 -0800 (PST) avneet singh wrote: Hello: I am new to R and am going through the growing pains, wonder if you could help alleviate some. I wished to find the estimate for a categorical variable without it being broken into levels but dont know how to. if I

RE: [R] scheduling R tasks under windows

2004-12-21 Thread bogdan romocea
Save the command(s) in a batch (.bat) file, and then run the .bat file from the task scheduler. -Original Message- From: Mikkel Grum [mailto:[EMAIL PROTECTED] Sent: Tuesday, December 21, 2004 3:18 PM To: RHelp Subject: [R] scheduling R tasks under windows I'm trying to schedule R tasks

Re: [R] Problems with Excel (was SAS or R software)

2004-12-21 Thread Kjetil Brinchmann Halvorsen
Patrick Burns wrote: I'm in the process of researching problems with Excel. The references given by Tim and Marc seem to lead to discussions of most of the problems with statistical procedures in Excel. The executive summary is that if it is in Excel and it looks like statistics, then avoid it.

Re: [R] PBIB datataset

2004-12-21 Thread Kjetil Brinchmann Halvorsen
(Ted Harding) wrote: On 20-Dec-04 Douglas Bates wrote: This is a new version of SASmixed that was uploaded a couple of days ago. I changed it so that the fits are done with the lme4 version of lme. It should be faster and more reliable than the version of lme in the nlme package. This

[R] (no subject)

2004-12-21 Thread NATALIA F TCHETCHERINA
Hello, I am working with maQualityPlots. I would like to change colors of graphs of 'Spatial:Rank(M-Raw)' and 'Spatial:Rank(M-Norm)' from blue-yellow to green-red.I think I need to change col=NULL in : maQualityPlots(mrawObj, headerInfo = , save = TRUE, dev = png, col=NULL, badspotfunction=NULL,

Re: Fwd: [R] problems with limma

2004-12-21 Thread Gordon K Smyth
On Wed, December 22, 2004 12:11 am, [EMAIL PROTECTED] said: - Forwarded message from [EMAIL PROTECTED] - Date: Mon, 20 Dec 2004 15:45:11 -0500 From: [EMAIL PROTECTED] Reply-To: [EMAIL PROTECTED] Subject: [R] problems with limma To: [EMAIL PROTECTED] I try to send

[R] Rgui.exe - Error while tuning svm

2004-12-21 Thread Andreas
Hello, if I try to tune my svm with the code: Tune - tune.svm(Data.Train, Class.Train, type=C-classification, kernel=radial, gamma = 2^(-1:1), cost = 2^(2:4)) i get a windows Messagebox with a error in the application Rgui.exe and the message: Die Anweisung in 0x6c48174d verweist auf Speicher

[R] Removing trailing spaces

2004-12-21 Thread Patrick Connolly
Some years ago when I used S-PLUS, I seem to remember, there was a discussion about a simple method of removing trailing spaces from vector elements. I'd be fairly sure the same would work in R, but I can't find any mention of anything like it in the R archives or with help.search(). There are

RE: [R] Removing trailing spaces

2004-12-21 Thread Berton Gunter
Use regular expressions: ?regexpr e.g. if myvec is your original vector of strings notrlblanks-sub('[[:blank:]]+?','',myvec) -- Bert Gunter Genentech Non-Clinical Statistics South San Francisco, CA The business of the statistician is to catalyze the scientific learning process. - George E.

Re: [R] Removing trailing spaces

2004-12-21 Thread Marc Schwartz
On Wed, 2004-12-22 at 11:38 +1300, Patrick Connolly wrote: Some years ago when I used S-PLUS, I seem to remember, there was a discussion about a simple method of removing trailing spaces from vector elements. I'd be fairly sure the same would work in R, but I can't find any mention of

Re: [R] Problems with Excel (was SAS or R software)

2004-12-21 Thread Marc Schwartz
On Tue, 2004-12-21 at 16:34 -0400, Kjetil Brinchmann Halvorsen wrote: Patrick Burns wrote: I'm in the process of researching problems with Excel. The references given by Tim and Marc seem to lead to discussions of most of the problems with statistical procedures in Excel. The executive

Re: [R] Removing trailing spaces

2004-12-21 Thread Tom Mulholland
I generally use sub like so sub( *$,,vector) x - c(this one ,and that one ,plus this) sub( *$,,x) [1] this one and that one plus this Tom Patrick Connolly wrote: Some years ago when I used S-PLUS, I seem to remember, there was a discussion about a simple method of removing trailing spaces

Re: [R] Removing trailing spaces

2004-12-21 Thread Patrick Connolly
On Tue, 21-Dec-2004 at 05:19PM -0600, Marc Schwartz wrote: | On Wed, 2004-12-22 at 11:38 +1300, Patrick Connolly wrote: | Some years ago when I used S-PLUS, I seem to remember, there was a | discussion about a simple method of removing trailing spaces from | vector elements. I'd be fairly

Re: [R] Removing trailing spaces

2004-12-21 Thread Peter Dalgaard
Patrick Connolly [EMAIL PROTECTED] writes: Some years ago when I used S-PLUS, I seem to remember, there was a discussion about a simple method of removing trailing spaces from vector elements. I'd be fairly sure the same would work in R, but I can't find any mention of anything like it in

Re: [R] Rgui.exe - Error while tuning svm

2004-12-21 Thread Duncan Murdoch
On Tue, 21 Dec 2004 23:29:11 +0100, Andreas [EMAIL PROTECTED] wrote: Hello, if I try to tune my svm with the code: Tune - tune.svm(Data.Train, Class.Train, type=C-classification, kernel=radial, gamma = 2^(-1:1), cost = 2^(2:4)) i get a windows Messagebox with a error in the application

RE: [R] (no subject)

2004-12-21 Thread Liaw, Andy
What you've shown us looks inconsistent: The data frame you show has variables X1 through X5 and `class'. If this is a data frame named `data', why do you call tree() with the formula V1 ~ X1? Where is V1? `data' is the name of a built-in R function. Try using some other name for the data

[R] how do I get my data in matrix form?

2004-12-21 Thread UW Email \(yunt\)
Hi, I am trying to convert the SPSS data that I imported using the package foreign into a matrix form in R. I tried using write.table() and cbind() but the output still looks bizzarre. I have about 104 columns and 21143 rows. Is the size of the the data causing a problem? Here was my approach

[R] GAM: Getting standard errors from the parametric terms in a GAM model

2004-12-21 Thread Jean G. Orelien
I am new to R. I'm using the function GAM and wanted to get standard errors and p-values for the parametric terms (I fitted a semi-parametric models). Using the function anova() on the object from GAM, I only get p-values for the nonparametric terms. Does anyone know if and how to get

Re: [R] how do I get my data in matrix form?

2004-12-21 Thread ccleland
You probably want something like this: library(foreign) mydata - read.spss(c:\\myfolder\\mydata.sav, to.data.frame=TRUE) - Original Message - From: UW Email (yunt) [EMAIL PROTECTED] Date: Tuesday, December 21, 2004 8:17 pm Subject: [R] how do I get my data in matrix form? Hi, I am

[R] GAM: Overfitting

2004-12-21 Thread Jean G. Orelien
I am analyzing particulate matter data (PM10) on a small data set (147 observations). I fitted a semi-parametric model and am worried about overfitting. How can one check for model fit in GAM? Jean G. Orelien __ [EMAIL PROTECTED] mailing list

Re: [R] how do I get my data in matrix form?

2004-12-21 Thread Achim Zeileis
On Tue, 21 Dec 2004 17:17:54 -0800 UW Email \(yunt\) wrote: Hi, I am trying to convert the SPSS data that I imported using the package foreign into a matrix form in R. I tried using write.table() and cbind() but the output still looks bizzarre. I have about 104 columns and 21143 rows. Is the

Re: [R] GAM: Overfitting

2004-12-21 Thread Frank E Harrell Jr
Jean G. Orelien wrote: I am analyzing particulate matter data (PM10) on a small data set (147 observations). I fitted a semi-parametric model and am worried about overfitting. How can one check for model fit in GAM? Jean G. Orelien It's good to separate 'model fit' (or lack of fit) from

Re: [R] How to interpret and modify plot.svm?

2004-12-21 Thread Frank Duan
Thank you, Dr. Meyer. I updated the e1071 package but still can't find the other three arguments for plot.svm. In addition, I can plot a gray-colored contour region by adding the argument col = c(gray(0.2), gray(0.8)). But I failed to change those colored x or o points into the shapes I want.

[R] Complex lme model

2004-12-21 Thread Emilio A. Laca
I would like to request help for coding the lme for the following: Soils from 14 Regions (fixed) were sampled every Year (fixed) during three years. Each Year each Region was sampled at several Points (random), and two Cores (random) were taken at each Point. Each Core was split into five Depths

RE: [R] Random intercept model with time-dependent covariates, results different from SAS

2004-12-21 Thread Christoph Buser
Answering on a mail from From Keith Wong keithw_at_med.usyd.edu.au Date Sun 04 Jul 2004 - 17:21:36 EST Subject [R] Random intercept model with time-dependent covariates, results different from SAS Hi all I've got a question about the degrees of freedom in a mixed model,