Re: [R] Using clustering functions
uv wrote: Hi. I need to use a few different clustering functions. I managed to run the kmeans() one which is in my stats library, but I can't use any function, such as agnes(), that is in my cluster library. Any idea how to access other libraries? Thanks! Both stats and cluster are packages, not libraries. You need to call library(cluster) in order to load package cluster from your library before using agnes() and her friends. Uwe Ligges __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Warning message with aggregate function
Xingwang Ye wrote: Dear all, When I use aggregate function as: attach(warpbreaks) aggregate(warpbreaks[, 1], list(wool = wool, tension = tension), sum) The results are right but I get a warning message: number of items to replace is not a multiple of replacement length. BTW: I use R version 2.4.1 in Ubuntu 7.04. Does not happen for me, neither with R-2.4.1 nor with recent versions of R. Maybe you have redefined one of the used objects (aggregate, warpbreaks, wool, tension, sum) in one of your environments? BTW: Is is always a bad idea to make much use of attach()... Uwe Ligges Your kind solutions will be great appreciated. Best wishes Yours, sincerely, Xingwang Ye __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] how to extract t-test statistics from glm()?
Bin Sun wrote: I need to extract t-test statistics from glm(). For example, Coefficients: Estimate Std. Error t value Pr(|t|) (Intercept) 46.219911.6310 3.974 0.000106 *** Var1 1.0440 0.5948 1.755 0.081088 . Var2 -0.4717 2.0257 -0.233 0.816178 Var3 0.2376 0.1454 1.635 0.104024 And I want to put all the t-values (and if possible, only that is associated with one particular independent variable such as Var3) to another table that can be reused later. I'm new to R and your help is highly appreciated! coefficients(summary(glm())) Uwe Ligges Eric [[alternative HTML version deleted]] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] creat list
livia wrote: Hi, I have a list named lista, which has 50 vectors and each vector has the length about 1200. I would like to creat a matrix out of lista. What I try now is cbind(lista[[1]],lista[[2]],...,lista[[50]]). I guess there would be an easy way of doing this. Could anyone give me some advice? matrix(unlist(lista), ncol=50) Uwe Ligges __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] problem formatting and positioning title in heatmap
Mark W Kimpel wrote: I am using heatmap with the arguments below. The title size stays the same no matter what I set cex.main to. Is this expected? Can I adjust the title size in heatmap? Also, the position of the main title is at the very upper edge of the output and if I use a \n to stack the title the upper line is out of bounds and doesn't show up. I am outputting to pdf. Any help? Thanks, Mark Use par() to set that parameter of the device as in: par(cex.main=1) heatmap(.) Uwe Ligges heatmap(x = dataM, RowSideColors = RowSideColors, ColSideColors=ColSideColors, main = title, margins = c(50,50), scale= do.scale ,labRow=geneNames, labCol=colLabels, col = hmcol, cex.main = 1, cexRow = row.lab.mag, cexCol = col.lab.mag) sessionInfo() R version 2.6.0 Under development (unstable) (2007-08-29 r42686) i686-pc-linux-gnu locale: LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C attached base packages: [1] splines tools stats graphics grDevices utils datasets [8] methods base other attached packages: [1] RColorBrewer_1.0-1 MergeMaid_2.9.0MASS_7.2-36 [4] rat2302_1.17.0 rat2302cdf_1.17.0 affycoretools_1.9.4 [7] annaffy_1.9.1 KEGG_1.17.1GO_1.99.1 [10] xtable_1.5-1 gcrma_2.9.1matchprobes_1.9.10 [13] biomaRt_1.11.4 RCurl_0.8-3XML_1.92-1 [16] GOstats_2.3.16 Category_2.3.30genefilter_1.15.11 [19] survival_2.32 RBGL_1.13.6annotate_1.15.6 [22] GO.db_1.99.1 AnnotationDbi_0.1.12 RSQLite_0.6-0 [25] DBI_0.2-3 limma_2.11.11 affy_1.15.7 [28] preprocessCore_0.99.12 affyio_1.5.8 Biobase_1.15.30 [31] graph_1.15.14 loaded via a namespace (and not attached): [1] cluster_1.11.7 __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] kendalls tau c
Barbara Diane-Spillmann wrote: dear all, does anybody know if cor.test with method=kendall calculates kendalls tau a b or c? I need to get p values for kendalls tau c... May I ask what the difference between Kendall's tau a, b and c is? Any references? Uwe Ligges thank you very much for any kind of hint. Barbara __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] some problems with linebuffer; was: Bug?
Johanna Hasmats wrote: Ok, attaching all files. You need to run it in the following order: parse.RData Korrelation.RData I have reduced this script to only include the error part. Input files are in the following order: oligo.prest.out for parse.RData to work. Produces the next input file oligolista for Korrelation.RData to work, which also needs the input file 8_SkBr _13433630.gpr. The function GenePixData can be found in the aroma package. Thank you for your help, 1. Package kth is unavailable for us. 2. I do not know anything about a package called aroma, it is neither on CRAN nor in the BioC repositories. 3. Can you please also try to make your example smaller? 4. The convention is to save R objects in .Rdata files, but to have R code in .R files. Uwe Ligges Johanna *** Johanna Hasmats Royal Institute of Technology AlbaNova University Center Stockholm Center for Physics, Astronomy and Biotechnology School of Molecular Biotechnology Department of Gene Technology Visiting address: Roslagstullsbacken 21, Floor 3 106 91 Stockholm, Sweden Delivering address: Roslagsvägen 30 B 104 06 Stockholm, Sweden Phone (office) +46 8 553 783 44 Fax + 46 8 553 784 81 ** -Original Message- From: Deepayan Sarkar [mailto:[EMAIL PROTECTED] Sent: Friday, August 31, 2007 8:12 PM To: Uwe Ligges Cc: Johanna Hasmats; r-help@stat.math.ethz.ch Subject: Re: [R] Bug? On 8/31/07, Uwe Ligges [EMAIL PROTECTED] wrote: Johanna Hasmats wrote: Hi! How can I get around in R 2.5.1 in Windows: Error in strsplit(linebuffer, ) : object linebuffer not found Why should this be a bug in R, if you have no object named linebuffer in the environments that are on the search path. This sounds like it could have something to do with the command completion mechanism through package rcompgen (which does use an internal variable called 'linebuffer'). Since this doesn't seem to be a common problem, you need to give us instructions on how to reproduce it. -Deepayan __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Question on shardsplot
Ebi, keisyu, or whatever your name is, I know that this questions has already been answered by the shardplot author in a private thread, where this has been posted under a different name. Why do you obscure your real name on the list??? The answer by Nils Raabe was that shardsplot is intended to draw the cluster map but adding sample numbers is more difficult. His quick proposal that needs some minor tweaking is: xycords - cbind(kronecker(1:14, rep(1,6)), rep(1:6, 14)) labs - sapply(1:nrow(xycords), function(x) paste(as.character(which( (iris.som3$visual[,1] + 1 == xycords[x,1]) * (iris.som3$visual[,2] + 1 == xycords[x,2]) == 1)), collapse = ;)) text(cbind(xycords[,2], xycords[,1]), labs, cex=0.75) Uwe Ligges ebi wrote: Dear All, Would you please tell me how to display the sample No. on the map ? ---Below commands don't display the sample No.(from 1 to 150).--- library(som) library(klaR) iris.som3 - som(iris[,1:4], xdim = 14,ydim = 6) library(klaR); opar- par(xpd = NA) shardsplot(iris.som3, data.or = iris,label = TRUE) legend(3.5,14.3, col = rainbow(3), xjust =0.5, yjust = 0,legend = levels(iris[, 5]),pch = 16, horiz = TRUE) par(opar) Ebi [[alternative HTML version deleted]] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Bug?
Johanna Hasmats wrote: Hi! How can I get around in R 2.5.1 in Windows: Error in strsplit(linebuffer, ) : object linebuffer not found Why should this be a bug in R, if you have no object named linebuffer in the environments that are on the search path. Uwe Ligges It comes a few lines after the actual strsplit, and yesterday everything was fine… Thank you in advance Kindest regards, *** Johanna Hasmats Ph.D Student Royal Institute of Technology AlbaNova University Center Stockholm Center for Physics, Astronomy and Biotechnology School of Molecular Biotechnology Department of Gene Technology Visiting address: Roslagstullsbacken 21, Floor 3 106 91 Stockholm, Sweden Delivering address: Roslagsvägen 30 B 104 06 Stockholm, Sweden Phone (office) +46 8 553 783 44 Fax + 46 8 553 784 81 ** [[alternative HTML version deleted]] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] R and Windows Vista
Jan Budczies wrote: Hello group, it is reported (R for Windows FAQ) that R runs under Windows Vista. However, does someone here have experience with R under Vista 64 and large (3 or 4 GB) memory? There is no 64-bit version of R for Windows available now. Mainly because there are no really stable gcc compilers available for that platform yet. You are welcome to contribute patches that make R work under 64-bit Vista with some compilers, of course. Uwe Ligges Greeting - Jan Budczies [[alternative HTML version deleted]] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Single plot multiple levels in x?
What about something like:
library(lattice)
posi - seq (0.5, 62525, 199.233)
mydf - NULL
for (i in 1:5) {
df1 - data.frame(i, posi)
mydf - rbind(mydf, df1)
}
myy - rep(-100.01:100.01, length=nrow(mydf))
mydf - cbind(mydf, myy)
names(mydf) - c(State, Position, PctRecurr)
mydf$State - factor(mydf$State)
Then you can ask
xyplot(PctRecurr ~ Position | State, data=mydf, layout= c(5,1))
or perhaps:
xyplot(PctRecurr ~ Position | State, data=mydf, layout= c(5,1),
scales=list(axs='i'))
Uwe Ligges
Richard Yanicky wrote:
Uwe,
Here is some code to create some data then a plot (The plot was done in
another package). The plot is included only to reference the structure of the
x-axis. I can't get R to do something similar.
State - seq (1:5);
posi - seq (0.5,62525,199.233)
mydf-NULL;
for ( i in 1:5) {
df1-data.frame(i,posi);
mydf - rbind(mydf,df1); }
myy-rep(-100.01:100.01,length=nrow(mydf));
mydf-cbind(mydf,myy);
names(mydf) - c(State,Position,Pct Recurr);
I would like to somehow:
plot(c(mydf[,1],mydf[,2]),mydf[,3]) and end up with the nested structure on
the x-axis.
Thanks,
Richard
-Original Message-
From: Uwe Ligges [EMAIL PROTECTED]
Sent: Aug 30, 2007 10:50 AM
To: Richard Yanicky [EMAIL PROTECTED]
Cc: r-help@stat.math.ethz.ch
Subject: Re: [R] Single plot multiple levels in x?
Richard Yanicky wrote:
Uwe,
I have looked into lattice and can't seem to make this work. I can easily
make multiple panels but this isn't what I am looking to do. Any
suggestions on which functions to use? the axis function seems a natural
place to start but I still can't seem to make it happen.
If lattice is not what you want, I do not understand what you mean. Can
you give a more elaborated example, please?
Uwe
HELP!
Richard
-Original Message-
From: Uwe Ligges [EMAIL PROTECTED]
Sent: Aug 30, 2007 5:59 AM
To: Richard Yanicky [EMAIL PROTECTED]
Cc: r-help@stat.math.ethz.ch
Subject: Re: [R] Single plot multiple levels in x?
Richard Yanicky wrote:
Plotting with 2 x axis?
One axis inside another, for example salary within state,
1-50 | 50 – 100 | 100+ | 1- 50 | 50 -100 | 100+ | …
repeated bins for salary
AL ! AR
…… more states
Sounds like the lattice package does exactly what you want, but without
any reproducible example.
Uwe Ligges
The values are all stored with a single data frame. I have tried
different things with the axis function and done many searches for
plotting. Can’t find a direct reference
Thanks.
Richard
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Re: [R] Incomplete output with `sn' library package
The derived information matrix is not of full rank for your data. See the code of the functions, which is not that hard to read. Uwe Ligges MANASI VYDYANATH wrote: You have my sincere apologies for the incompleteness of my message. I have given the details below, including my dataset and my code. I'm using R, version 2.5.0. My OS is a Mac, (version Tiger). The sn package is Version 0.4-1 My code was as follows: mydata - read.table(url(http://www.statsci.org/data/oz/ ais.txt), header = T) attach(mydata) a - msn.fit(X = cbind(1,Ht,Wt), y = BMI, control = list(x.tol=1e-6)) b - msn.mle(X=cbind(1,Ht,Wt), y=SSF) a b My problem is that neither the a nor the b output gives me any standard errors - those should appear under $se. In both the regressions, this field is left blank with NA under it. I would appreciate some help on this matter - are the standard errors not supposed to appear here, or is there something else I should put into the inputs? Thank you once again for your time, Manasi On Aug 30, 2007, at 5:47 AM, Uwe Ligges wrote: MANASI VYDYANATH wrote: Dear R users: I have a question regarding the output for two of the functions in the `sn' package, which deals with the mle fitting of skew normal curves to linear regressions. I'm using the examples and the dataset given as an example in the online documentation for this package, for the functions `msn.fit' and `msn.mle'. I'm following the example code in the documentation for these two functions exactly. Part of the data output is supposed to be se, which gives the standard errors of the estimated coefficients. This particular value comes out as being NA in the examples given, but there are three coefficients in each case and no numerical problems about why the standard errors cannot be calculated. Am I setting this program up right? Is there some other command I should use (or an option I need to use) to get the output to display standard errors of the coefficients? We cannot know if you use it right, since you have not given any details on OS, R version, sn version, and particularly a reproducible example. As each R-help message tells in the footer: PLEASE do read the posting guide http://www.R-project.org/posting- guide.html and provide commented, minimal, self-contained, reproducible code. Uwe Ligges Thank you for your time in reading this question - Cordially, Manasi __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting- guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] gsub warning message
Talbot Katz wrote: Hi. I am using R 2.5.1 on a Windows XP machine. Here is an example of a piece of code I was running in older versions of R on the same machine. I am looking for underscores and replacing them with periods. This result is from R 2.4.1: gsub ( \\_+,\.,AAA_I) [1] AAA.I Here is what I get in R 2.5.1: gsub ( \\_+,\.,AAA_I) [1] AAA.I Warning messages: 1: '\.' is an unrecognized escape in a character string 2: unrecognized escape removed from \. I still get the same result, which is what I want, but now I get a warning message. Am I actually doing something wrong that the previous versions of R didn't warn me about? Or is this warning message unwarranted? Is there a fully approved method for getting the same functionality? Thanks! Yes, correct usage is either gsub ( \\_+, ., AAA_I) or gsub ( \\_+, \\., AAA_I) Uwe Ligges -- TMK -- 212-460-5430 home 917-656-5351 cell __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Incomplete output with `sn' library package
MANASI VYDYANATH wrote: Dear R users: I have a question regarding the output for two of the functions in the `sn' package, which deals with the mle fitting of skew normal curves to linear regressions. I'm using the examples and the dataset given as an example in the online documentation for this package, for the functions `msn.fit' and `msn.mle'. I'm following the example code in the documentation for these two functions exactly. Part of the data output is supposed to be se, which gives the standard errors of the estimated coefficients. This particular value comes out as being NA in the examples given, but there are three coefficients in each case and no numerical problems about why the standard errors cannot be calculated. Am I setting this program up right? Is there some other command I should use (or an option I need to use) to get the output to display standard errors of the coefficients? We cannot know if you use it right, since you have not given any details on OS, R version, sn version, and particularly a reproducible example. As each R-help message tells in the footer: PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. Uwe Ligges Thank you for your time in reading this question - Cordially, Manasi __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Simple Graph
amna khan wrote: Hi Sir We use the function mpg() for ticks on axes. If we define more number of ticks then each tick is not labeled. How to label each tick on axes? What is mpg()? Which version of R? Which device? Which OS? I guess R cannot print more labels because the ticks are too dense, but there is no reproducible example in your message. PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. Uwe Ligges Regards __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Q: Mean, median and confidence intervals with functions summary boxplot.stats
Tom Willems wrote: Dear R ussers, My question is, How can my mean be outside the confidence intervals ?! I think i have the answer for it, but i would like to hear some other ideas on it. First my data is not continuose but categorical, it is a titre calculated on a dilution serie. It is stored as a column of values, and a column indicating the phase of the trail. Theoreticaly it is possible to have a value ranging from 0 to 4, but in practice, only sertain values will occure, and they will repeat. So it are frequencies. This is why i belief that it is better to work with a median than with a mean, because it represents the cluster of values wich occure most. Below I only give one example, but the mean being below the lowest confidence limit occures several times over different tests. does my answer seam reasonable, or should i perhapes use an other methode, any sugestion? summary_1d = summary(subset(eda_data, phase=='1' test=='test 1' ,select=lg_value), na.rm = T) conf_1d = boxplot.stats(subset(eda_data, phase=='1' test=='test 1' ,select=lg_value)) MeanMedian 95% Confidence Int. StDev. Variance 1.1981.681 1.4411.922 0.931 0.866 I do not understand which confidence has been calculated? Based on which assumptions / data? Is it pointwise or not? We need much more information - and if you think it is a problem with R or usage of R functions, then please give us a reproducible example. Uwe Ligges Kind regards, Tom W. Disclaimer: click here [[alternative HTML version deleted]] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] How to signal the end of the table?
What about trying to use a database system and make queries?
If you are at the end of a file, you will read elements of length 0...
Uwe Ligges
Yuchen Luo wrote:
I am using a for loop to read a table row by row and I have to specify how
many records are there in the table. I need to read row by row because the
table is huge and the memory not large enough for the whole table.:
number.of.records=100
fp=file(abc.csv,r)
pos=seek(fp, rw=read)
for (i in 1:number.of.record){
current.row=scan(file=fp, sep=',', what=list(count=1, cusip6=, idate=1,
spread=1.1, vol252=1.1, vol1000=1.1, st_debt=1.1, lt_debt=1.1 , total_liab=
1.1, cr=1.1, shrout=1.1, prc=1.1, mkt_cap=1.1, rtng=1.1, sec=1.1, cr3m=1.1,
cr5y=1.1, ust3m=1.1, ust5y=1.1), flush=TRUE, nlines=1,quiet=T)
...
}
I need to know the number of records in the table and put it in the variable
named number.of.records. When I have a new table that I do not know how
many records it has, I use excel to open the file to figure it out and put
it in variable number.of.records. I often have many tables to try and
every one of them has thousands of recordsit takes a lot of time and
trouble to adjust the code every time I read a different table.
I am wondering if I can change the for loop to a while loop:
while (the end of the table has not been reached)
{
current.row=scan(file=fp, sep=',', what=list(count=1, cusip6=, idate=1,
spread=1.1, vol252=1.1, vol1000=1.1, st_debt=1.1, lt_debt=1.1 , total_liab=
1.1, cr=1.1, shrout=1.1, prc=1.1, mkt_cap=1.1, rtng=1.1, sec=1.1, cr3m=1.1,
cr5y=1.1, ust3m=1.1, ust5y=1.1), flush=TRUE, nlines=1,quiet=T)
...
}
The problem is how to articulate while (the end of the table has not been
reached), or equivalently, how to signal the end of the table?
Best Wishes
Yuchen Luo
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Re: [R] Single plot multiple levels in x?
Richard Yanicky wrote: Plotting with 2 x axis? One axis inside another, for example salary within state, 1-50 | 50 – 100 | 100+ | 1- 50 | 50 -100 | 100+ | … repeated bins for salary AL ! AR …… more states Sounds like the lattice package does exactly what you want, but without any reproducible example. Uwe Ligges The values are all stored with a single data frame. I have tried different things with the axis function and done many searches for plotting. Can’t find a direct reference Thanks. Richard __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Simple Graph
amna khan wrote: Hi Sir If I want 10 ticks on x-axis and 10 ticks on y-axis then I use lab=c(10,10, 20) Here first 10 is for 10 ticks on x-axis, second 10 is for 10 ticks on y-axis and 20 is the lenght of x and y labels in characters. Now my question is that how I can label all 10 ticks on x-aixs and all 10 ticks on y-axis, because R leaves some ticks unlabeled. So either make the font size smaller or rotate the labels... Uwe Ligges Thank You __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Single plot multiple levels in x?
Richard Yanicky wrote: Uwe, I have looked into lattice and can't seem to make this work. I can easily make multiple panels but this isn't what I am looking to do. Any suggestions on which functions to use? the axis function seems a natural place to start but I still can't seem to make it happen. If lattice is not what you want, I do not understand what you mean. Can you give a more elaborated example, please? Uwe HELP! Richard -Original Message- From: Uwe Ligges [EMAIL PROTECTED] Sent: Aug 30, 2007 5:59 AM To: Richard Yanicky [EMAIL PROTECTED] Cc: r-help@stat.math.ethz.ch Subject: Re: [R] Single plot multiple levels in x? Richard Yanicky wrote: Plotting with 2 x axis? One axis inside another, for example salary within state, 1-50 | 50 – 100 | 100+ | 1- 50 | 50 -100 | 100+ | … repeated bins for salary AL ! AR …… more states Sounds like the lattice package does exactly what you want, but without any reproducible example. Uwe Ligges The values are all stored with a single data frame. I have tried different things with the axis function and done many searches for plotting. Can’t find a direct reference Thanks. Richard __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] sql query over local tables
Jorge Cornejo Donoso wrote: Hi i have to table with IDs in each one. I want to make a join (as in sql) by the ID. Is any way to use the RODBC package (or other) in local tables (not a access, mysql, sql, etc. ) and made the join? I guess you are looking for ?merge Uwe Ligges Thanks in advance __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Recoding multiple columns consistently
Ron Crump wrote: Hi, I have a dataframe that contains pedigree information; that is individual, sire and dam identities as separate columns. It also has date of birth. These identifiers are not numeric, or not sequential. Obviously, an identifier can appear in one or two columns, depending on whether it was a parent or not. These should be consistent. Not all identifiers appear in the individual column - it is possible for a parent not to have its own record if its parents were not known. Missing parental (sire and/or dam) identifiers can occur. I need to export the data for use in another program that requires the pedigree to be coded as integers, increasing with date of birth (therefore sire and dam always have lower identifiers than their offspring) and with missing values coded as 0. How would I go about doing this? And a second, simpler related question, if I have a column with n different values (may be strings or non-sequential integers) identifying levels (possibly with repeated occurences), how can I recode them to be sequential from 1 to n? rank(x, ties.method=first) For the question above you can do as follows, for example: order() identifiers by date, make them unique() and assign them to a new levels object. Then make them ordered factors: factor(some_column, levels=levels, ordered = TRUE) and then as.numeric(factor_object) is what you are going to get. Uwe Ligges I can solve both problems in fortran, so could use loops to do it in R, but feel there should be quicker, more elegant, more R solution. Thanks for your help. Ron. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] attempt at making a polygon class failed
Leeds, Mark (IED) wrote:
I was reading a presentation of Professor Peng's and typed the
presentation code into R but I changed it to make plot.polygon a
separate function instread of defining the function in SetMethod itself
as he did. Is that the problem with the code below because
plot(p) just gives me zero. Thanks.
setClass(polygon, representation(x = numeric,
y = numeric))
plot - function(object)
{
return(0)
}
If you redefine plot this way, you cannot use a call to the generic plot
within the plot.polygon function any more.
Hence do *not* define the new plot() function above. The rest should work.
Uwe Ligges
setGeneric(plot)
plot.polygon - function(x, y, ...) {
xlim - range([EMAIL PROTECTED])
ylim - range([EMAIL PROTECTED])
plot(0,0, type = n, xlim = xlim, ylim = ylim, ...)
xp - c([EMAIL PROTECTED], [EMAIL PROTECTED])
yp - c([EMAIL PROTECTED], [EMAIL PROTECTED])
lines(xp, yp)
}
setMethod(plot,polygon,plot.polygon)
p - new(polygon, x = c(1,2,3,4), y = c(1,2,3,1))
plot(p)
This is not an offer (or solicitation of an offer) to buy/se...{{dropped}}
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Re: [R] xeon processor and ATLAS
Prof Brian Ripley wrote: On Tue, 28 Aug 2007, hui xie wrote: hi everyone: I have a Dell Server that has a Xeon processor, and I would like to use the best ATLAS posted in the R website. I find that R has ATLAS for core2duo and P4. I am not sure which one of these two is best suited for Xeon processor, or is that neither of these two is good and I should stick with the default one that was installed originally? And your OS is? There are many different 'Xeon' processors with very different capabilities. ... the earlier similar to P4 and some similar to Core2Duo. You won't make use of bigger L2/L3 caches in Xeon processors. You really ought to build ATLAS for yourself if numerical linear algebra performance matters to you (and it makes little difference to most people: I think Uwe Ligges quoted 10% for testing all CRAN packages). Right, it depends on what you are really doing. If most time is spend in certain numerical matrix operations, ATLAS is your friend. In all other cases, it does not matter so much, as Brian cited correctly. Uwe Ligges Your advice is very much appreciated! Best, Hui - Park yourself in front of a world of choices in alternative vehicles. [[alternative HTML version deleted]] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. Please do! __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Histogram Title SizeFont
livia wrote: Hello, I would like to plot a histogram with title Return, and I would like the font for the title to be Bold and the size to be 8( as in Excel). I tried the following code, but it does not make any change. Could anyone give me some advice? See ?par. Uwe Ligges hist (preturn, seq(-0.05,0.05,0.005),freq = FALSE, main=Return, font=2, cex=8,xlab=return,xlim=c(-0.05,0.05)) Many thanks. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Plot command drops part of the plot for large plots in multiple figure environment
Your examples are not reproducible. Hence hard to tell what goes wrong.
There never was an R version 1.51.
Please use a current version of R and read the pposoting guide.
Uwe Ligges
Lindveld, Charles wrote:
I have run into some surprising behaviour when plotting data in a 3x2
grid:
random parts of the data on my graphs aren't rendered. Not on screen,
not on file,
and not when I send the plot to a printer. I don't get any error
messages either.
When I do the individual plots (not in a grid) they are each rendered
correctly.
My questions are:
- Has anyone encountered something like this, or is it particular to my
installation?
- Have I hit one of R's limits, and can I increase that limit?
- Would there be any workarounds that will allow me to get those 6
graphs
in one single plot without thinning the data?
The circumstances of the problem are:
The data I am plotting consists of 4 dataframes and 4 strings:
d1 - d4 are dataframes of dimension 308160 x 21 that contain a column
named det_ok_num.
BPS1 - BPS4 are strings
I'm running R 1.51 under Windows XP and I have 2 Gb of core memory, 800
Mb free, and 5 Gb swappable.
All variables are in memory; the total amount of memory used by the Rgui
process is slightly less than 400Mb.
The plot command I use is
Fplot6_Det_OK (d1, d2, d3, d4, d1, d2, BPS1, BPS2, BPS3, BPS4, BPS1,
BPS2)
I am using the following two small plot functions:
Fplot6_Det_OK = function(d1, d2, d3, d4, d5, d6, BPS1, BPS2, BPS3, BPS4,
BPS5, BPS6) {
# Purpose: Plot detector status for MONICA loops
# make 3x2 subplot window and plot 6 loops
#
#
op - par(no.readonly = TRUE)
par_plot6 - par(mfrow = c(3, 2))
FplotDetOK (d1, BPS1)
FplotDetOK (d2, BPS2)
FplotDetOK (d3, BPS3)
FplotDetOK (d4, BPS4)
FplotDetOK (d5, BPS5)
FplotDetOK (d6, BPS6)
par(op)
}
FplotDetOK = function(d, BPS) {
# Purpose: Plot detector status for MONICA loops
#
#
subtitleStr = paste (BPS = , BPS)
plot(d$det_ok_num, pch=., col=blue, sub = subtitleStr)
}
Charles Lindveld
Centre for Transport Studies
Imperial College London
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Re: [R] xeon processor and ATLAS
hui xie wrote: Thanks very much for all your advice. To be clear, my OS is window XP. I bought this server last year. It's Dell Precision PWS690. THe processor is Xeon(TM) CPU 3GHZ, 2G RAM. I am not sure how to check more details of processor on my computer. But I went to Dell website and from what I can recall, it seemed that I ordered a Dual-core Intel Xeon 5160 3GHz, 1333FSB, 4MB L2 Cache, 80watts. I think from time to time, I will need linear algebra to do things such as Choleskey Factorization, and matrix inverse etc... At the same time, I considered myself quite unskilled on building R by myself. It seems there were lots of details that I can get things wrong. So if there is an existing ATLAS one on R website that I can use, I would be very happy to use it to replace the default one. The reason why I would like to use ATLAS is that R FAQ said : The savings can be appreciable: on a 2.6GHz P4 and a 1000 x 1000 matrix svd took 16.2 sec with the standard BLAS and 7.8 sec with ATLAS. Because ATLAS is tuned to a particular chip we can't use it generally: the optimal routines for a P4 or an Athlon XP are quite different and neither will run at all on a PII. This seems to me an impressive gain to use the correct ATLAS instead of the default BLAS. I guess my Xeon processor is either a P4 or Core2Duo, but I am really not sure which one to use. Could you please offer me some suggestions? As a Google search tells you, the Xeon 5100 series is Core2 based while 5000 and former CPUs were NetBurst based. Uwe Ligges Again, many thanks for all your advice! Best, Hui Uwe Ligges [EMAIL PROTECTED] wrote: Prof Brian Ripley wrote: On Tue, 28 Aug 2007, hui xie wrote: hi everyone: I have a Dell Server that has a Xeon processor, and I would like to use the best ATLAS posted in the R website. I find that R has ATLAS for core2duo and P4. I am not sure which one of these two is best suited for Xeon processor, or is that neither of these two is good and I should stick with the default one that was installed originally? And your OS is? There are many different 'Xeon' processors with very different capabilities. ... the earlier similar to P4 and some similar to Core2Duo. You won't make use of bigger L2/L3 caches in Xeon processors. You really ought to build ATLAS for yourself if numerical linear algebra performance matters to you (and it makes little difference to most people: I think Uwe Ligges quoted 10% for testing all CRAN packages). Right, it depends on what you are really doing. If most time is spend in certain numerical matrix operations, ATLAS is your friend. In all other cases, it does not matter so much, as Brian cited correctly. Uwe Ligges Your advice is very much appreciated! Best, Hui - Park yourself in front of a world of choices in alternative vehicles. [[alternative HTML version deleted]] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. Please do! - Yahoo! oneSearch: Finally, mobile search that gives answers, not web links. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] outdated R and package dependencies; was: R Help
Ola Asteman wrote:
I got the Warning message below when I tried to load Locfit. What is wrong?
Please read the posting guide which suggests to use a sensible subject line.
Regards
Ola Asteman
--
R version 2.4.0 (2006-10-03)
It makes sense to upgrade to a recent version of R.
Copyright (C) 2006 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
library(foreign)
library(mgcv)
This is mgcv 1.3-19
library(locfit)
How was locfit installed?
install.packages(locfit, dependencies = TRUE)
should also install the package's dependencies - and you have not all
installed, among them akima.
Uwe Ligges
Loading required package: akima
Error: package 'akima' could not be loaded
In addition: Warning message:
there is no package called 'akima' in: library(pkg, character.only = TRUE,
logical = TRUE, lib.loc = lib.loc)
--
This e-mail and any attachment may be confidential and may a...{{dropped}}
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Re: [R] changing text direction of mtext
squall44 wrote: Hello, Does anyone know if it's possible to change the text direction of mtext? I'd like to use 'mtext(side=2)' but the text should be 'left-to-right'. I couldn't find an argument for that in the help files. It's just one help file you have to read: ?mtext. Please also read the introductory R manuals (and maybe look into some good textbook on R). Since we all do know now that you cannot read help pages, I read ?mtext for you: In section Arguments: ... Further graphical parameters (see par), including family, las and xpd. (This defaults to the figure region unless outer = TRUE, otherwise the device region. It can only be increased.) In section Details: Parameter las will determine the orientation of the string(s). For strings plotted perpendicular to the axis the default justification is to place the end of the string nearest the axis on the specified line. (Note that this differs from S, which uses srt if at is supplied and las if it is not.) Please also note that you can look into the R-help archives before posting questions that have been answered dozens of times already - as the posting guide to this list asks you to do. Uwe Ligges Thanks for any suggestions Tobias __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] as.numeric : what goes wrong?
Wolfgang Polasek wrote: I have a character vector j1 created from dimnames and want it to convert it to numeric. Like the first element: j1[1] f896 1 896 Probably this is a factor? as.numeric(j1[1]) [1] 1990 And this is the number the factor level 896 has been coded with. ?factor tells us: The interpretation of a factor depends on both the codes and the levels attribute. Be careful only to compare factors with the same set of levels (in the same order). In particular, as.numeric applied to a factor is meaningless, and may happen by implicit coercion. To “revert” a factor f to its original numeric values, as.numeric(levels(f))[f] is recommended and slightly more efficient than as.numeric(as.character(f)). Hence as.numeric(levels(f))[f] is the way to go. Best, Uwe Ligges why is it not 896 as it should be? This is true fr the whole vector. Thanks W.P. [[alternative HTML version deleted]] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Two graphs, align vertically
squall44 wrote: Hi, I created an ecdf and a boxplot. Now I would like to place the ecdf above the boxplot. But I only managed to align them horizontally. I used this code: #--- par(mfrow=c(1,2), mar=c(5,3,3,1)) As in the message before: Please read the help pages more carefully! You found par(mfrow), what about reading the help page and switching to c(2,1)? Uwe Ligges # ecdf library(plotrix) x = c(1.6,1.8,2.4,2.7,2.9,3.3,3.4,3.4,4,5.2) F2.5 - ecdf(x) plot(F2.5, verticals= TRUE, do.p = TRUE, lwd=3, ylab = , xlab = , main = Figur 2.5 Empirische Verteilfunktion, xlim = c(1,5.5)) abline(h= (0:5)*0.2) staxlab(at=x,labels=paste(X[,1:10,],sep=),nlines=3,top.line=2, line.spacing=1, cex=0.8) #boxplot F26-boxplot(x, horizontal=TRUE, main=Figur 2.6 Der Boxplot, axes=FALSE, varwidth=TRUE) #--- Can anyone tell me how I need to change the code to align the two graphs vertically? Thanks in advance Tobias __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Histogram
squall44 wrote: Hello, I wanted to create a histogram, but somehow I got stuck... The interval limits are: x = 1, 2, 3, 3.5, 4.5, 5, 5.5 The interval widths are therefore: 1, 1, 0.5, 1, 0.5, 0.5 Please read the help page more carefully! See ?hist and its argument breaks. Uwe Ligges Nothing I tried worked... Can anyone help me please? Thanks Tobias __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] two labels on x-axis (year and month)
[EMAIL PROTECTED] wrote: hej i'm plotting time-series and label the x-axis as follows: r - as.POSIXct(round(range(p1$time), month)) to define the time range for labeling the xaxis plot(p1$time,p1$ p1, type=l, xaxt=n) plots p1 against time axis.POSIXct(1, at=seq(r[1], r[2], by=month), format=%m) labels the axis in mothly steps. what I want do do now, is a second label for the x-axis, that stands lower and indicates the years. like 05 06 07 08 09 10 11 12 01 02 03 04 05 etc... 2004 2005 I don't know how to proceed with all the possibilities in axis, par and plot You can add the year numbers manually with mtext() (for plotting text into the margins). Uwe Ligges thanks for your help __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Histogram
squall44 wrote: Well, that was the first thing I tried. But the help only gives you the commands and does not explain how to use it (I am a newbe). How do I use the argument 'breaks'? I tried: #--- x = c(1, 2, 3, 3.5, 4.5, 5, 5.5) breaks=c(1, 1, 0.5, 1, 0.5, 0.5) hist(x, breaks= breaks, xlim=c(0,7), ylim=c(0,5)) #--- ...which didn't work. Well, breaks means breaks, not the widths of the bins, hence hist(youData, breaks = c(1, 2, 3, 3.5, 4.5, 5, 5.5)) is what you want, but that is meaningsless since you have not yet given any data. Uwe Ligges I tried many other variations, but I am a beginner. If anyone can give me a clue, I'd be very thankful. Tobias Uwe Ligges wrote: squall44 wrote: Hello, I wanted to create a histogram, but somehow I got stuck... The interval limits are: x = 1, 2, 3, 3.5, 4.5, 5, 5.5 The interval widths are therefore: 1, 1, 0.5, 1, 0.5, 0.5 Please read the help page more carefully! See ?hist and its argument breaks. Uwe Ligges Nothing I tried worked... Can anyone help me please? Thanks Tobias __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] rectify a program of seasonal dummies matrix
Friedrich Schuster wrote:
Hello,
the main problem seems to be the if else, should be else if.
Your code is hard to read, maybe you should consider using more () {}:
T - 100;
br - matrix(0,T,4);
Thanks for the contribution. Please note:
a) It is a bad idea to have a variable called T. Some people still use
it as a logical value even if they should not.
b) R does not need any ; at the end of a line.
Uwe Ligges
for (i in 1:T) {
for (j in 1:4) {
if (i==j) {
br[i,j] - 1;
}
else if ((abs(i-j)%%4)==0) {
br[i,j] - 1;
}
else {
br[i,j] - 0;
}
}
}
A simpler approach is creating a diagonal matrix and multply it :
# create small diagonal matrix
mat = diag(x=1, nrow=4, ncol=4);
mat
# multiply diagonal matrix and re-dimension it to 4 cols
br - rep(mat, 25);
dim(br) - c(100, 4);
br;
Hope this helps,
FS
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and provide commented, minimal, self-contained, reproducible code.
Re: [R] Random Sampling from a Matrix
Anup Nandialath wrote: Dear Friends, I have a matrix of size 5000 X 20. The first two columns are indicator variables taking the value of either 0 or 1. Let us call the first two columns Y1 and Y2. I need to randomly sample 1000 rows with all the associated columns, in other words my new matrix should be of size 1000 X 20. I realize that using this command newmat - mainmat[sample(1000,replace=F),] achieves this. However, I would like to make sure that both Y1 and Y2 have more or less an equal amount of 0's and 1's. At present when I sample, I get cases where sometimes all my Y2's are 0. Is there any way to accomodate this problem. Yes, for example drawing samples stratified by the values of Y1 or Y2. Uwe Ligges Thanks in advance. Regards Anup - [[alternative HTML version deleted]] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Differentiation
Shubha Vishwanath Karanth wrote: Hi, Could anyone tell me what is the command used in R to do 1.Differentiation See ?deriv and note that R is numerical software and only has limited capabilities for symbolic mathematics such as differentiation. 2.Newton Raphson method (Numerical Analysis in general...) For numerical optimization see ?optim which implements several methods. Uwe Ligges Are there any packages separately for this? Thanks for your help! BR, Shubha [[alternative HTML version deleted]] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Labelling certain points on the x-axis
squall44 wrote: Hello, I created an empirical distribution function: x = c(1.6,1.8,2.4,2.7,2.9,3.3,3.4,3.4,4,5.2) F2.5 - ecdf(x) plot(F2.5, verticals= TRUE, do.p = TRUE, lwd=3, ylab = f(x), xlab = x, main = Figur 2.5 Empirische Verteilfunktion, xlim = c(1,5.5)) abline(h= (0:5)*0.2) See ?mtext for adding text into the margins. Uwe Ligges Now I would like to label the points on the x-axis where there is an x-value: http://www.nabble.com/file/p12231344/figur.gif I don't know how to do that... can anyone help me? Thanks __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Question about writing some code
squall44 wrote: Just a short question: Why does this work: x = c(1.6,1.8,2.4,2.7,2.9,3.3,3.4,3.4,4,5.2) F26-boxplot(x, add=FALSE, horizontal=TRUE, main=Figur 2.6 Boxplot, axes=FALSE) boxplot returns some information on the boxplot, but the result cannot be plotted by boxplot itself. You can use bxp() to do so. Uwe Ligges ...but this doesn't... x = c(1.6,1.8,2.4,2.7,2.9,3.3,3.4,3.4,4,5.2) F26 - boxplot(x) plot(F26, add=FALSE, horizontal=TRUE, main=Figur 2.6 Boxplot, axes=FALSE) Thanks for any help, Squall44 __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Problem with lsa package (data.frame) on Windows XP
Please specify reproducible examples, it is almost impossible to help otherwise. Also, please provide all error messages and a traceback(). Please tell us versions of R and versions of the packages you are using. If you are sure this is an error in the package, please send that reproducible example to the package maintainer. Uwe Ligges Walter Rojas wrote: Dear R team, The following piece of code (to use the lsa package) works fine on my mac os x, but when I run the same code on Windows XP, it doesn't work any more. ### code: library(lsa) matrix1 = textmatrix(C:\\Documents and Settings\\tine stalmans.TINE. 000\\LSA\\cuentos\\, stemming=TRUE, language=spanish, minWordLength=2, minDocFreq=1, stopwords=NULL, vocabulary=NULL) print(matrix1,bag_lines = 3, bag_cols = 3) matrix1 = lw_bintf(matrix1) * gw_idf(matrix1) space = lsa(matrix1, dims = dimcalc_share()) as.textmatrix(space) ### the following line fails on windows XP matrix2 = textmatrix(C:\\Documents and Settings\\tine stalmans.TINE. 000\\LSA\\respuestas\\, stemming=TRUE, language=spanish, minWordLength=2, minDocFreq=1, stopwords=NULL,vocabulary=rownames (matrix1)) matrix2 = lw_bintf(matrix2) matrix2fld = fold_in(matrix2, space) r - cor(matrix2fld[,respId1.txt], matrix2fld[,respAl1.txt], method = pearson) print(r) An error occurs when creating the second textmatrix with the vocabulary of the first. The error I get is: in data.frame(docs = basename(file), terms = names(tab), Freq = tab, : arguments imply differing number of rows: 1, 0 When I change the vocabulary argument to NULL, it doesn't report this error any more; however, then the code will fail on the fold_in method further down. I found another user who reported this same problem on-line; however, I didn't find any answers. Thank you very much in advance for your reply. Tine. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Is there any good tools to facilitate us to create R functions?
zhijie zhang wrote:
Dear R users,
We have some programs for the specific task in our research, but they were
very commonly used. We want to make some functions for them, anybody can
recommend any good tools to facilitate us to create R functions even without
going deep into the theories of R functions ?
Any suggestions or help are greatly appreciated.
The tool is a) a manual, b) your eye, and after that c) your keyboard.
So, what is your program if it is not a function?
If my guess is right and your programm is a sequence of many lines of R
code: given you have a program that calculates the square root of x, then
myfoo - function(x){
sqrt(x)
}
is your function:
myfoo(4)
Uwe Ligges
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Re: [R] pakages
Safaa Najla wrote: Good Morning i am in doctorate. i want to ask for the packages of R, i tried to install it, What? R or packages? How did you try it, please give us more details as suggested in the posting guide! but it appears not found. Complete error message, please. each time i have to delete and install again the programme R. Why? Are there another method for installing the package? Which one are we talking about? Or do you mean R itself? In that case, what is your OS etc.? Again, please read the posting guide. Uwe Ligges thank you __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] need help to manipulate function and time interval
KOITA Lassana - STAC/ACE wrote:
Hi,
data are extracted from MS Access with the format: (%d/%m%Y %H%M%S); ex:
16/09/2006 03:38:37
1. the example you gave in your first message is still not reproducible,
you gave the following:
myfunc - function(mytab, Time, Level)
{
vect - rep(0, length(mytab))
for(i in 1:length(vect))
{
for(j in 1:length(Time))
if(time[j] is between 18:00:00 and 23:59:59)
L[i] - L[j]+5
vect[i] - 10^((L[i])/10
if (time[j] is between 22:00:00 and 05:59:59)
L[i] - L[j]+10
vect[i] - 10^((L[i])/10
else
L[i] = L[j]
vect[i] - 10^((L[i])/10
}
}
a) Please check the parentheses (some closing ) are missing, you also
probably want to group some code {} that is executed in some of the
if conditions rather than executing the (syntactically erroneous) line
vect[i] - 10^((L[i])/10
three times for each inner loop. Particularly, the else is
syntactically incorrect with not preceding if.
So my guess is you want something like
myfunc - function(mytab, Time, Level)
{
vect - rep(0, length(mytab))
for(i in 1:length(vect))
{
for(j in 1:length(Time))
{
if(time[j] is between 18:00:00 and 23:59:59){
L[i] - L[j]+5
vect[i] - 10^(L[i]/10)
}
if (time[j] is between 22:00:00 and 05:59:59){
L[i] - L[j]+10
vect[i] - 10^(L[i]/10)
} else {
L[i] - L[j]
vect[i] - 10^(L[i]/10)
}
}
}
But I am really not sure about that and why you subsitute L[i] so many
times...!
b) What are mytab, Time and Level?
2. Which is the format do you have?
(%d/%m%Y %H%M%S)
*or*
16/09/2006 03:38:37
If the latter, you can use
dat - strptime(16/09/2006 03:38:37, %d/%m/%Y %H:%M:%S)
in order to get some POSIXlt object for later calculations.
3. What do you mean with
time[j] is between 22:00:00 and 05:59:59
Is the day of the date important or not for this comparison?
Uwe Ligges
I still have error messneger
Thank you for your help.
Lassana KOITA
Chargé d'Etudes de Sécurité Aéroportuaire et d'Analyse Statistique /
Project Engineer Airport Safety Studies Statistical analysis
Service Technique de l'Aviation Civile (STAC) / Civil Aviation Technical
Department
Direction Générale de l'Aviation Civile (DGAC) / French Civil Aviation
Headquarters
Tel: 01 49 56 80 60
Fax: 01 49 56 82 14
E-mail: [EMAIL PROTECTED]
http://www.stac.aviation-civile.gouv.fr/
Uwe Ligges [EMAIL PROTECTED]
12/08/2007 15:24
A
Matthew Walker [EMAIL PROTECTED]
cc
Henrique Dallazuanna [EMAIL PROTECTED], r-help@stat.math.ethz.ch, KOITA
Lassana - STAC/ACE [EMAIL PROTECTED]
Objet
Re: [R] need help to manipulate function and time interval
Matthew Walker wrote:
Uwe Ligges wrote:
Henrique Dallazuanna wrote:
Hi,
Try whit:
if(time[j] = 18:00:00 23:59:59)
This code is obviously wrong and does not help for the next few lines
in the questioner's message, please do not post unsensible stuff.
Uwe Ligges
Actually, I would have said that was quite an interesting solution. If
the time is guaranteed to be in this 8 character format, then that
idea's quite easily implemented:
# Returns true if time is between 18:00:00 and 23:59:59
check_time - function(time_string) {
if (nchar(time_string)!=8) stop (Incorrect format)
time_string = 18:00:00 time_string = 23:59:59
}
check_time(19:59:00)
[1] TRUE
check_time(16:59:00)
[1] FALSE
check_time(18:00:00)
[1] TRUE
check_time(23:59:59)
[1] TRUE
check_time(24:00:00)
[1] FALSE
check_time(18:05)
Error in check_time(18:05) : Incorrect format
Perhaps there is an issue if the locale does not sort character-based
numbers in the same way as ASCII? But Otherwise, I can't see why this
solution wouldn't do the job.
A more robust solution solution would parse the strings (?strptime) and
then check their days/hours/mins/seconds (?DateTimeClasses). But
perhaps the above is sufficient?
Well, the interesting part of the original question that everynody seems
to omit now was the second part:
if (time[j] is between 22:00:00 and 05:59:59)
hence the answer is still not sufficient (even if the syntax error has
been corrected) - and hence I asked for the format the time is
originally in.
Uwe Ligges
Cheers,
Matthew
[[alternative HTML version deleted]]
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Re: [R] need help to manipulate function and time interval
Matthew Walker wrote:
Uwe Ligges wrote:
Henrique Dallazuanna wrote:
Hi,
Try whit:
if(time[j] = 18:00:00 23:59:59)
This code is obviously wrong and does not help for the next few lines
in the questioner's message, please do not post unsensible stuff.
Uwe Ligges
Actually, I would have said that was quite an interesting solution. If
the time is guaranteed to be in this 8 character format, then that
idea's quite easily implemented:
# Returns true if time is between 18:00:00 and 23:59:59
check_time - function(time_string) {
if (nchar(time_string)!=8) stop (Incorrect format)
time_string = 18:00:00 time_string = 23:59:59
}
check_time(19:59:00)
[1] TRUE
check_time(16:59:00)
[1] FALSE
check_time(18:00:00)
[1] TRUE
check_time(23:59:59)
[1] TRUE
check_time(24:00:00)
[1] FALSE
check_time(18:05)
Error in check_time(18:05) : Incorrect format
Perhaps there is an issue if the locale does not sort character-based
numbers in the same way as ASCII? But Otherwise, I can't see why this
solution wouldn't do the job.
A more robust solution solution would parse the strings (?strptime) and
then check their days/hours/mins/seconds (?DateTimeClasses). But
perhaps the above is sufficient?
Well, the interesting part of the original question that everynody seems
to omit now was the second part:
if (time[j] is between 22:00:00 and 05:59:59)
hence the answer is still not sufficient (even if the syntax error has
been corrected) - and hence I asked for the format the time is
originally in.
Uwe Ligges
Cheers,
Matthew
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Re: [R] QUESTION ON R!!!!!!!!!!!1
I think I asked you yesterday on the [EMAIL PROTECTED] account to read the posting guide *before* posting to R-help and I asked you not to SHOUT!!! Uwe Ligges lecastil wrote: Good day. I am employed at a public entity that handles million information and records of several variables and distributed in several topics. For the statistical analyses we use a statistical package, which allows us to call directly of the database (ORACLE) the information and to realize the statistical analysis. Everything is done in brief time. Nevertheless, we want to know if the statistical package R is capable of doing the same thing that does the statistical package with which we work, that is to say, is R capable of importing information of a database of million records to maximum speed and later statistical analysis allows to realize once imported the information?. I am grateful for prompt response to you since it is of supreme urgency to know this information. Luis Eduardo Castillo Méndez. ** Buen día. Trabajo en una entidad pública que maneja millones de datos y registros de varias variables y distribuidos en varios tópicos. Para los análisis estadísticos usamos un paquete estadístico, el cuál nos permite llamar directamente de la base de datos (ORACLE) la información y realizar el análisis estadístico. Todo se hace en tiempo breve. Sin embargo, queremos saber si el paquete estadístico R es capaz de hacer lo mismo que hace el paquete estadístico con el que trabajamos, es decir, R es capaz de importar datos de una base de datos de millones de registros a velocidad máxima y después permita realizar análisis estadístico una vez importado los datos? . Te agradezco pronta respuesta ya que es de suma urgencia saber este dato. Luis Eduardo Castillo Méndez. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] LDA and RDA: different training errors
dominic senn wrote: Hello I try to fit a LDA and RDA model to the same data, which has two classes. The problem now is that the training errors of the LDA model and the training error of the RDA model with alpha=0 are not the same. In my understanding this should be the case. Am I wrong? Can someone explain what the reason for this difference could be? I assume lda from MASS? If you are using rda() from package rda, I do not know, since the help page is not very specific in telling which parameter means what (but I guess one of them should be 1). If you choose rda() from package klaR, the help page tells you that gamma=0, lambda=1 should produce identical results to LDA. (lambda=1 means that the pooled covariance matrix is weighted with 1 while the specific covariance matrices are weigthed with 0. Uwe Ligges Here my code: LDA model: === % x is a dataframe tmp = lda(response ~ ., data=x) tmp.hat = predict(tmp) tab = table(x$response, tmp.hat$class) lda.training.err = 1 - sum(tab[row(tab)==col(tab)])/sum(tab) RDA model: === % x is converted into a matrix without the response % variable. This matrix is then transposed tmp = rda(x, y, alpha=0, delta=0) rda.training.err = tmp$error / dim(x)[2] % The training error provided by rda.cv() is also different % from the training errors provided by lda() or rda() tmp.cv = rda.cv(tmp, x=x, y=y, nfold=10) tmp.cv$err / dim(x)[2] / 10 Thanks a lot! __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Help with cumsum function
Hectorman Hectorman wrote: Hello! I have a question regarding the cumsum function that I do not know how to solve. Would appreciate help from someone. I have imported data from a txtfile with 2 columns. I am interested in the seconds column, which contains numbers from i=0 to 40. I would like to count the number of instances of the numbers 0 to 40 in the seconds column. My problem is that if there are no observations of one number i in the second column cumsum skips this in the output. Below is an example of the output of the argument Y=cumsum(table(x[,2])) 0 1 2 3 5 6 789 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 3 5 6 10 13 14 16 18 21 25 27 30 32 35 38 40 42 54 105 233 306 341 383 417 2526 27 28 2930 31 32 33 34 35 36 37 38 39 40 441 468 487 502 518 532 542 546 552 564 566 574 578 584 591 594 As you can see from the output there are no observations of i=4 in this column. Are there any way I could return the following result instead 0 1 2 3 45 6 78 and so on 3 5 6 10 10 13 14 16 18 When i=4 cumsum is the same as when i=3 (10) Y - cumsum(table(factor(x[,2], levels=0:40))) Uwe Ligges I would really appreciate if anyone could help me with this one:) Jan Moberg __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Plot legend in margin
Daniel Brewer wrote: Hi all, Another plotting question I am afraid. Is there anyway of putting a legend for a plot in a margin rather than within the figure. I am trying to plot a 3x2 plot and I want to have: 1) One key along the bottom for all the plots 2) A label (a,b,c) for each plot (see previous emails) Is there any websites etc. that explain this sort of thing? Please read the posting guide. After that, type: RSiteSearch(legend margin) Currently, the fourth entry shows a solution: http://finzi.psych.upenn.edu/R/Rhelp02a/archive/67979.html Uwe Ligges Dan __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] need help to manipulate function and time interval
Henrique Dallazuanna wrote: Hi, Try whit: if(time[j] = 18:00:00 23:59:59) This code is obviously wrong and does not help for the next few lines in the questioner's message, please do not post unsensible stuff. Uwe Ligges ... ... __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] need help to manipulate function and time interval
KOITA Lassana - STAC/ACE wrote:
Hi R-users,
I have to define a noise level function L and its energy in the various
moment of the day by:
if time is between 18:00:00 and 23:59:59 then L[j] - L[j]+5 and W -
10^((L+5)/10)
What kind of object is time? Just a character or some Time/Date format?
Do you know the day?
If time is between 18:00:00 and 23:59:59, should the next point (time is
between 22:00:00 and 05:59:59) be executed additionally if time is,
e.g., 23:00:00 or is there any other condition I cannot see?
All the information is quite essential in order to help...
BTW: I don't think the rest of your code is sensible (at least, some
braces are missing).
Uwe Ligges
if time is between 22:00:00 and 05:59:59 == L - L+10 and W -
10^((L+10)/10)
else
L=L and W = W
Could someone help me to realize this function please? You will find my
following proposal code, but my main problem is to handle the time
interval.
Best regard
###
myfunc - function(mytab, Time, Level)
{
vect - rep(0, length(mytab))
for(i in 1:length(vect))
{
for(j in 1:length(Time))
if(time[j] is between 18:00:00 and 23:59:59)
L[i] - L[j]+5
vect[i] - 10^((L[i])/10
if (time[j] is between 22:00:00 and 05:59:59)
L[i] - L[j]+10
vect[i] - 10^((L[i])/10
else
L[i] = L[j]
vect[i] - 10^((L[i])/10
}
}
###
Lassana KOITA
Chargé d'Etudes de Sécurité Aéroportuaire et d'Analyse Statistique /
Project Engineer Airport Safety Studies Statistical analysis
Service Technique de l'Aviation Civile (STAC) / Civil Aviation Technical
Department
Direction Générale de l'Aviation Civile (DGAC) / French Civil Aviation
Headquarters
Tel: 01 49 56 80 60
Fax: 01 49 56 82 14
E-mail: [EMAIL PROTECTED]
http://www.stac.aviation-civile.gouv.fr/
[[alternative HTML version deleted]]
__
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
__
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
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Re: [R] help on getting weekday
Baoqiang Cao wrote: Dear All, I'd like to know which weekday it is for any given date, such as, what is the weekday for 2006-06-01? Any help will be highly appreciated. See ?weekdays Uwe Ligges Best, Baoqiang [[alternative HTML version deleted]] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] plot to postscript orientation
Miruna Petrescu-Prahova wrote: Hi I am trying to save some plots in a postscript file. When I generate the plots in the main window, they appear correctly - their orientation is landscape (i.e., horizontal). However, when I open the .ps file with GSview, the whole page appears vertically, and the plot appears horizontally, which means that the plot is only partially visible (example here https://webfiles.uci.edu/mpetresc/postscript.files/default.ps ). I searched the R-help mailing list archive and found 2 suggestions: setting the width and height and setting horizontal = FALSE. I have tried setting the width and height but it makes no difference. I have also tried using horizontal = FALSE. This rotates and elongates the plot, but it is still displayed horizontally on a vertical page, and so only partially visible (example here https://webfiles.uci.edu/mpetresc/postscript.files/horiz.false.ps). I am not sure what is wrong. Plots are created with filled.contour. I guess this is a misconfiguration of your GSview. The plots are fine for me. Anyway, you might also want to set the argument paper=special in the postscript() call. Uwe Ligges Thanks Miruna Miruna Petrescu-Prahova Department of Sociology University of California, Irvine [EMAIL PROTECTED] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Problem with making dll under Windows
Please check that you have installed a suitable environment (tools,
compiler etc.) as mentioned in the R Installation and Administration
manual. Öooks like your version of Perl is corrupted.
I got with your C program:
d:\aaaR CMD SHLIB dmypow.c
making dmypow.d from dmypow.c
gcc -It:/R/include -Wall -O3 -std=gnu99 -c dmypow.c -o dmypow.o
windres -I t:/R/include -i dmypow_res.rc -o dmypow_res.o
gcc -shared -s -o dmypow.dll dmypow.def dmypow.o dmypow_res.o
-Lt:/R/bin-lR
Uwe Ligges
Albrecht, Dr. Stefan (APEP) wrote:
Dear all,
I have problems to compile a DLL for Windows XP with R version 2.5.1
(2007-06-27).
See output below:
C:\AZ_DATEN\C, C++\BE_speedupR CMD SHLIB dmypow.c
Goto undefined subroutine DynaLoader::bootstrap_inherit at
C:\Programme\R\R-2.5
.1\share\perl/XSLoader.pm line 80.
Compilation failed in require at c:/Programme/Perl/lib/IO/Handle.pm line 262.
BEGIN failed--compilation aborted at c:/Programme/Perl/lib/IO/Handle.pm line
262
.
Compilation failed in require at c:/Programme/Perl/lib/IO/Seekable.pm line
101.
BEGIN failed--compilation aborted at c:/Programme/Perl/lib/IO/Seekable.pm
line 1
01.
Compilation failed in require at c:/Programme/Perl/lib/IO/File.pm line 133.
BEGIN failed--compilation aborted at c:/Programme/Perl/lib/IO/File.pm line
133.
Compilation failed in require at
C:\Programme\R\R-2.5.1\share\perl/FileHandle.pm
line 6.
Compilation failed in require at C:\Programme\R\R-2.5.1\share\perl/R/Utils.pm
li
ne 6.
BEGIN failed--compilation aborted at
C:\Programme\R\R-2.5.1\share\perl/R/Utils.p
m line 6.
Compilation failed in require at C:\Programme\R\R-2.5.1/bin/SHLIB line 24.
BEGIN failed--compilation aborted at C:\Programme\R\R-2.5.1/bin/SHLIB line 24.
The file DynaLoader.pm is in the same directory as, e.g. XSLoader.pm
The c-file itself is very simple:
#include Rinternals.h
#include math.h
SEXP mypow(SEXP lifeFund, SEXP bow)
{
int i;
double n;
n = length(lifeFund);
for (i=0; in; i++)
REAL(lifeFund)[i] = pow((i+1)/n,REAL(bow)[0]);
return(lifeFund);
}
Could anybody help, please?
With many thanks and best regards,
Stefan
Dr. Stefan Albrecht, CFA
Allianz Private Equity Partners GmbH
Königinstr. 19 | 80539 Munich | Germany
Phone: +49.(0)89.3800.18317
Fax: +49.(0)89.3800.818317
EMail: [EMAIL PROTECTED] mailto:[EMAIL PROTECTED]
Web: www.apep.com http://www.apep.com/
Allianz Private Equity Partners GmbH | Geschäftsführung: Wan Ching Ang, Karl
Ralf Jung
Sitz der Gesellschaft: München | Registergericht: München HRB 126221 |
Ust-ID-Nr.: DE 813 264 786
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[R] useR! 2008
We are happy to announce that the R user conference useR! 2008 is scheduled for August 12-14, 2008, and will take place at the University of Dortmund. As for the predecessor conferences, the program will consist of two parts: invited lectures and user-contributed sessions (abstract submission will be available online starting from December 2007). Prior to the conference, there will be tutorials on R (proposals for tutorials should be sent before 2007-10-31). INVITED LECTURES Invited speakers will include Peter Bühlmann, John Fox, Kurt Hornik, Gary King, Duncan Murdoch, Jean Thioulouse, Graham J. Williams, and Keith Worsley. USER-CONTRIBUTED SESSIONS The sessions will be a platform to bring together R users, contributors, package maintainers and developers in the S spirit that `users are developers'. People from different fields will show us how they solve problems with R in fascinating applications. The sessions are organized by members of the program committee, including Micah Altman, Roger Bivand, Peter Dalgaard, Jan de Leeuw, Ramón Díaz-Uriarte, Spencer Graves, Leonhard Held, Torsten Hothorn, François Husson, Christian Kleiber, Friedrich Leisch, Andy Liaw, Martin Mächler, Kate Mullen, Ei-ji Nakama, Thomas Petzold, Martin Theus, and Heather Turner. The program will cover topics such as * Applied Statistics Biostatistics * Bayesian Statistics * Bioinformatics * Chemometrics and Computational Physics * Data Mining * Econometrics Finance * Environmetrics Ecological Modeling * High Performance Computing * Machine Learning * Marketing Business Analytics * Psychometrics * Robust Statistics * Sensometrics * Spatial Statistics * Statistics in the Social and Political Sciences * Teaching * Visualization Graphics * and many more. PRE-CONFERENCE TUTORIALS Before the official program, half-day tutorials will be offered on Monday, August 11th. We invite R users to submit proposals for three hour tutorials on special topics on R. The proposals should give a brief description of the tutorial, including goals, detailed outline, justification why the tutorial is important, background knowledge required and potential attendees. The proposals should be sent before 2007-10-31 to [EMAIL PROTECTED] A web page offering more information on the `useR!' conference is available at http://www.R-project.org/useR-2008 ABOUT DORTMUND In the past, Dortmund was famous for coal, steel and the beer industry - quite typical for a city in the Ruhrgebiet. Today, Dortmund evolves to a city with high tech industry, exhibitions and service companies. Dortmund's football (i.e. soccer) club is world famous and attracts roughly 8 people on a regular basis. IMPORTANT DATES 2007-10-31: submission deadline of tutorial proposals 2007-12-01: start of registration 2007-12-01: start of online abstract submission 2008-03-31: early registration deadline: 2008-03-31: submission deadline of abstracts 2008-05-15: notification of acceptance 2008-05-31: regular registration deadline 2008-07-25: registration deadline We hope to meet you in Dortmund! The conference committee: Uwe Ligges (conference), Achim Zeileis (program), Claus Weihs, Gerd Kopp (local organization), Friedrich Leisch, Torsten Hothorn ___ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-announce __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] A combinatorial task. How to get rid of loops
Serguei Kaniovski wrote:
Dear List,
I am looking for a faster way of accomplishing this:
# n is an integer larger than two
n - 3
# matrix of 2^n binary outcomes
bmat - as.matrix(expand.grid( rep( list(1:0), n))[, n:1])
# I would like to know which rows of bmat have 1 in the i and j
coordinates, so for n=3 in coordinates 1-2, 1- 3, and 2-3
# I would like then to construct choose( n, 2) binary vectors of lengths
2^n to indicate those rows with a 1
# The loop below accomplishes this task. Is there a faster way of doing
the same?
library(combinat)
# matrix of all pairwise combinations
cmat-combn( n, 2)
One example is:
n - 3
bmat - as.matrix(expand.grid( rep( list(1:0), n))[, n:1])
library(combinat)
cmat-combn( n, 2)
apply(cmat, 2, function(x) as.numeric(bmat[,x[1]] bmat[,x[2]]))
Uwe Ligges
temp-matrix(NA, nrow(bmat), ncol(cmat))
for (i in 1:nrow(bmat))
{
for (j in 1:ncol(cmat))
{
temp[ i, j]-as.numeric( bmat[i,][cmat[1,j]]
bmat[i,][cmat[2,j]] == 1)
}
}
Thank you very much for your help!
Serguei Kaniovski
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Re: [R] warning messages in grid or lattice give that I can't debug
Richard M. Heiberger wrote: The messages are visible in 2.6.0dev The same commands in 2.4.1 work without warning messages. I am using the HH_1.18-1 from R_2.4.1 with both R versions and not the current HH_2.1-3 version$version.string installed.packages()[c(grid,lattice, HH),3] ## library(HH) library(lattice, lib.loc=C:/PROGRA~1/R/R-2.4.1/library) It is essential not to use a lattice version designed for R-2.4.1 with R-devel... And I don't see a reason, and in some cases, switching to another major version of R requires recompiling of packages anyway. Uwe Ligges hotdog - read.table(hh(datasets/hotdog.dat), header=TRUE) ancova(Sodium ~ Calories + Type, data=hotdog) the messages in R_2.6.0dev are Warning messages: 1: In grid.Call.graphics(L_points, x$x, x$y, x$pch, x$size) : supplied color is not numeric nor character ... 6: In grid.Call.graphics(L_points, x$x, x$y, x$pch, x$size) : supplied color is not numeric nor character My guess is that these warnings are a response to a change in grid or lattice in 2.5.0. I attempted to trace these with options(warn=2) options(error=recover) without success. Debugging suggestions or revised programming suggestions would be appreciated. Rich __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] passing args to R CMD BATCH in win 2000
[EMAIL PROTECTED] wrote: Hello and sorry to bother. Please help. I searched the archives but could not find out why --args is being ignored on Windows 2000. That does not work with R CMD BATCH, AFAIK. In fact, you want to use: Rterm --no-save --args 12 11.R 11.Rout Uwe Ligges I try R CMD BATCH --slave 11.R 11.Rout --args 12 and 11.R has x=commandArgs(trail=T) print(x) a=x[length(x)] write.csv(a,file=13.out) q(no) the argument is not passed to the R process. 11.Rout only shows processing time and 13.out does not have the value. Thank you all. stephen [[alternative HTML version deleted]] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] beamer error with R
Mario Alfonso Morales Rivera wrote:
Dear R users,
When I use beamer with \usepackage{harvard} it don't work.
Why is this related to R? I do not see any connections here.
Uwe Ligges
\LaTeX{} give mi an error message, ¿any suggestion?
! LaTeX Error: No counter 'paragraph' defined.
See the LaTeX manual or LaTeX Companion for explanation. Type H
return for immediate help.
...
l.741 \newcounter{lsubparagraph}[paragraph]
? ! Emergency stop.
...
l.741 \newcounter{lsubparagraph}[paragraph]
Your command was ignored. Type I command return to replace it
with another command, or return to continue without it.
! LaTeX Error: No counter 'paragraph' defined.
See the LaTeX manual or LaTeX Companion for explanation.
Type H return for immediate help.
...
l.741 \newcounter{lsubparagraph}[paragraph]
?
! Emergency stop.
...
l.741 \newcounter{lsubparagraph}[paragraph]
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Re: [R] Re : beamer error with R
justin bem wrote:
Is it possible to realise slides with R ?
If you want to combine LaTeX and R code, take a look at SWeave.
Uwe Ligges
Justin BEM
BP 1917 Yaoundé
Tél (237) 99597295
(237) 22040246
- Message d'origine
De : Uwe Ligges [EMAIL PROTECTED]
À : Mario Alfonso Morales Rivera [EMAIL PROTECTED]
Cc : [EMAIL PROTECTED]
Envoyé le : Jeudi, 2 Août 2007, 14h26mn 56s
Objet : Re: [R] beamer error with R
Mario Alfonso Morales Rivera wrote:
Dear R users,
When I use beamer with \usepackage{harvard} it don't work.
Why is this related to R? I do not see any connections here.
Uwe Ligges
\LaTeX{} give mi an error message, ¿any suggestion?
! LaTeX Error: No counter 'paragraph' defined.
See the LaTeX manual or LaTeX Companion for explanation. Type H
return for immediate help.
...
l.741 \newcounter{lsubparagraph}[paragraph]
? ! Emergency stop.
...
l.741 \newcounter{lsubparagraph}[paragraph]
Your command was ignored. Type I command return to replace it
with another command, or return to continue without it.
! LaTeX Error: No counter 'paragraph' defined.
See the LaTeX manual or LaTeX Companion for explanation.
Type H return for immediate help.
...
l.741 \newcounter{lsubparagraph}[paragraph]
?
! Emergency stop.
...
l.741 \newcounter{lsubparagraph}[paragraph]
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_
l
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Re: [R] R2WinBUGS more updates after model did not converge
[EMAIL PROTECTED] wrote: After running a model for a while and seeing that it did not converge yet, how can I continue to run, ie not starting anew, the model? I know if I manually/interactively use winbugs, this is possible anytime, but how can I do this in r2winbugs, so that my existing sim$sims.array and other stuff in the object that bugs() returns gets extended? This is not possible with R2WinBUGS. But you can use BRugs, which is much more flexible, has an improved interface and uses OpenBUGS. It's CRAN version is based on OpenBUGS 2.x.y, but we (i.e. currently mainly Insightful people and myself) are on the way to release a new version based on OpenBUGS 3.x.y. Uwe Ligges Thanks Toby __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] A simple question about summary.glm
michal33 wrote: Hello, I am new to R and have tried to search similar questions but could not find exactly what I am looking for, but I apologize if the question was already asked. I have 10 different treatments and want to know whether they affect the sex ratios of insect emergence. After running the glms I got this table: Df Deviance Resid. Df Resid. Dev F Pr(F) NULL133 9250.3 sex1481.5 132 8768.9 7.7212 0.006314 ** trt9 1099.1 123 7669.7 1.9585 0.049780 * But now I would like to know WHICH of the treatments was significant. I tried to use Tukey test but for some reason it does not work. My question is: I used the following function: summary(file.name, corr=F) and got the following table: Deviance Residuals: Min 1Q Median 3Q Max -14.118 -4.808 -1.4662.033 33.882 Coefficients: Estimate Std. Error t value Pr(|t|) (Intercept) 8.696e+00 1.893e+00 4.594 1.06e-05 *** sexm-3.791e+00 1.364e+00-2.779 0.00631 ** trtccc -1.050e+00 4.325e+00-0.243 0.80859 trtcga3 2.450e+00 4.325e+00 0.566 0.57211 trtcga4 -2.300e+00 4.325e+00-0.532 0.59584 trtg 1.550e+00 2.497e+00 0.621 0.53593 trtga4 -5.550e+00 4.325e+00-1.283 0.20183 trtp 5.422e+00 2.566e+00 2.113 0.03658 * trtpg -1.850e+00 2.497e+00-0.741 0.46019 trtw-3.634e-17 2.497e+00 -1.46e-17 1.0 trtwg -3.750e+00 2.497e+00-1.502 0.13573 What do the stars mean? Well, you omitted the last lines from the output which include: Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 i.e. *** for values 0.001; * for values in [0.01, 0.05) etc. Uwe Ligges Is it the same as Tukey test that tells me which treatment is different from which? i.e. is trtp (with *) significantly different to the control (which, by the way do not appear in this list and I do not know why)? Thanks Michal __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] 'non-standard' folder names in R package
Tao Shi wrote: Hi list, I use a .xml file for a function's demo in the R package I'm creating. Since it doesn't belong to any of the 'standard' folders, i.e. those mentioned in the 'Writing R Extension', I put it in a folder call myXML, much like the 'iris.xl' file in 'xls' folder from 'gdata' package, for example. After running R CMD build, I could see the .xml file is in the ..tar.gz file. However, after running R CMD INSTALL -build, the file and the folder disappeared in both the .zip file and the installed package. (R CMD CHECK, of course, failed too before that, as myXML can't be installed.) Could anybody tell me what's the tricks to keep those folders in my installation? I'm using R-2.5.1 under WinXP. Thank you very much! If you want it to be in mypackage/myXML after installation, put it into mypackage/inst/myXML in the source package, as the manual you cited suggests. Uwe Ligges Tao _ Need a brain boost? Recharge with a stimulating game. Play now! __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Getting variable name used in function...
Levent TERLEMEZ wrote: Dear Users, I am using functions for calculations in my study. I have two functions and one is calling the other two times one after another. But the called function deals with two different data object (matrix, data frame, etc.), so I could not make the second function output data object-free (for example, Ý would like to write csv files but could not give different file names) and I would like to get object name. Is it possible to get data object's name. And if it is possible, how can I assign this name as an new data object name with an extra addition, for example, data objects name+2. Thanks for your help. Example: function1(var1,var2) function2(var1) function2(var2) ... Can you explain what you want in an example, please? I do not really undertsand what you are trying to do. Uwe Ligges With my best regards, Levent TERLEMEZ. [[alternative HTML version deleted]] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Problem with code
Shawndelle Noble wrote: Hi I am having the following Warning message with this code: Error in file(file, r) : unable to open connection In addition: Warning message: cannot open file- reason 'No such file or directory' in: file(file, r) The files are present on a CD and USB key- I tried opening all the files-then running the script but, it makes no difference. Then you are trying to open non-existing files or your mistyped the filenames. Simply check the filenames again. Basically How do I ensure that R reads my files to perform functions- I have some files on CD and other on my a USB key. By specifying the correct names. Also if I am using script that was already written, for new data - how do I know which info. in the existing script should be updated? If the script (= function ?) is well written, you just have to give the filenames as arguments to the functions. If not, you have to look into the sources and generalize ... Uwe Ligges Thanks faith1 [[alternative HTML version deleted]] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] deriv; loop
francogrex wrote:
Hi, 2 questions:
Question 1: example of what I currently do:
for(i in 1:6){sink(temp.txt,append=TRUE)
dput(i+0)
sink()}
x=scan(file=temp.txt)
print(prod(x))
file.remove(C:/R-2.5.0/temp.txt)
But how to convert the output of the loop to a vector that I can manipulate
(by prod or sum etc), without having to write and append to a file?
So, do you want the file at the end or not? If not:
x - 1:6
prod(x)
and if this is really the solution you want, the please read the posting
guide and the manuals before posting again.
Question 2:
deriv(~gamma(x),x)
expression({
.expr1 - gamma(x)
.value - .expr1
.grad - array(0, c(length(.value), 1), list(NULL, c(x)))
.grad[, x] - .expr1 * psigamma(x)
attr(.value, gradient) - .grad
.value
})
BUT
deriv3(~gamma(x),x)
Error in deriv3.formula(~gamma(x), x) : Function 'psigamma' is not in the
derivatives table
What I want is the expression for the second derivative (which I believe is
trigamma(x), or psigamma(x,1)), how can I obtain that?
By using some algebraic software (rather than a numeric one) or
contributing complete derivatives tables for the next R release.
Uwe Ligges
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and provide commented, minimal, self-contained, reproducible code.
Re: [R] Fwd: Package manual examples - 'unexpected$undefined' errors
David Pain wrote: Bounced first time! -- Forwarded message -- From: David Pain [EMAIL PROTECTED] Date: 28-Jul-2007 11:03 Subject: Package manual examples - 'unexpected$undefined' errors To: r-help@stat.math.ethz.ch Trying out an unfamiliar package, the natural thing is to use the examples given in the package's manual - hopefully, the writers of the package wouldn't include examples which didn't work! Recently, though, I've been getting 'unexpected$undefined' error messages when doing this, despite having copy/pasted the text from the manual (taking out hard breaks on the way). Well, we cannot know if the package does make problems (you haven't stated which one). Moreover, I've had error messages for commands which I've previously had work fine. For instance, this from Zelig z.out zelig(vote ~ race + educate, model = logit, data = turnout) has at different times worked fine and thrown up the error message. So you tell us the some package influences Zelig's functionality, but how can we help if you do not tell us which one it is? Uwe Ligges Any help gratefully received. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] line widths of plotting symbols in the lattice
Stephen Tucker wrote: Dear List, Sorry, this is very simple but I can't seem to find any information regarding line widths of plotting symbols in the lattice package. For instance, in traditional graphics: plot(1:10,lwd=3) points(10:1,lwd=2,col=3) 'lwd' allows control of plotting symbol line widths. 'lwd' is documented in ?gpar (the help page does not show up for me, I'll take a closer look why) and works for me: xyplot(1:10 ~ 1:10, type = l, lwd = 5) Uwe Ligges I've tried looking through the documentation for xyplot, panel.points, trellis.par.set, and the R-help archives. Maybe it goes by another name? Thanks in advance, Stephen __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Plotting a smooth curve from predict
Wilson, Andrew wrote: Probably a very simple query: When I try to plot a curve from a fitted polynomial, it comes out rather jagged, not smooth like fitted curves in other stats software. Is there a way of getting a smooth curve in R? What I'm doing at the moment (for the sake of example) is: x - c(1,2,3,4,5,6,7,8,9,10) y - c(10,9,8,7,6,6.5,7,8,9,10) b - data.frame(cbind(x,y)) w - gls(y ~ I(x)+I(x^2),correlation=corARMA(p=1),method=ML,data=b) plot(predict(w),type=l) predict() predicts at all locations in x and you are drawing straight lines between these points. Hence you need to predict in another resolution, e.g.: dat - data.frame(x = seq(1, 10, by = 0.1)) plot(predict(w, newdata = dat), type=l) Uwe Ligges Many thanks, Andrew Wilson __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Creating windows binary R package (PowerArchiver vs. zip -r9X)
Tao Shi wrote: Hi list,I apologize if you see funny fonts, b/c I'm using the new Windows Live Hotmail and don't know how to turn off the rich text mode.I have successfully built and installed a R package in windowsXP for R-2.5.1. But when I tried to create a .zip file so I can use Packages/install package(s) from local .zip files... to install it, it seems R only recognizes the .zip file created by zip -r9X not by PowerArchiver. Do you know why? I vaguely remember I used WinZip before and it worked fine.The two threads I found on R-help and R-devel help me a lot, but don't really answer my question.http://tolstoy.newcastle.edu.au/R/help/06/06/29587.htmlhttp://tolstoy.newcastle.edu.au/R/devel/05/12/3336.htmlThanks,...Tao In order to provide a Windows binary package, type: R CMD INSTALL --build PackageName_vers.tar.gz and the zip file will be generated by R in the correct way. Uwe Ligges __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] qda(MASS) function error
Mauro Rossi wrote: Dear R user, I'm using qda (quadratic discriminant analysis) function (package MASS) to classify 58 explanatory variables (numeric type with different ranges) using a grouping variable (factor 2 levels 0 1). I'm using the qda method for class 'data.frame' (in this way I don't need to specify a formula). Using the function: result.qda-qda(explanatory.variables, grouping.variable, method=moment) I obtain the following error message: Error in qda.default(x, grouping, ...) : rank deficiency in group 0 I run the script excluding some variables and I've individuated 2 explanatory variables that give problems, but I don't understand why they give them. The two excluded variables are numeric with two possible values: 0 and 1, but in the rest of group of variables, some similar variables are considered. I don't have this problem using lda function for linear discriminant analysis. What does this error message mean? What types of variables does qda function consider? Well, qda assumes real values (and not factors) in the explanatory variables. If you think it makes sense to ignore this assumption (and I doubt it makes sense), then the error message tells you there is a rank deficiency, i.e. some variables might be collinear. Hence at least one of the covariance matrices cannot be inverted. Uwe Ligges Thank in advance, Mauro Rossi __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] error in using R2WinBUGS on Ubuntu 6.10 Linux
[EMAIL PROTECTED] wrote:
I am trying to run WinBUGS 1.4 from the Ubuntu 6.10 Linux distribution. I am
using the R2WinBUGS packages with the source file listed below. WinBUGS
appears to run properly, but I get the following message after WinBUGS starts
in WINE. Does anyone know what may be causing this error and what the
correction may be?
Thanks
ERROR MESSAGE:
fixme:ole:GetHGlobalFromILockBytes cbSize is 13824
err:ole:CoGetClassObject class {0003000a---c000-0046} not
registered
err:ole:CoGetClassObject class {0003000a---c000-0046} not
registered
err:ole:CoGetClassObject no class object
{0003000a---c000-0046} could be created for context 0x3
fixme:keyboard:RegisterHotKey (0x10032,13,0x0002,3): stub
fixme:ntdll:RtlNtStatusToDosErrorNoTeb no mapping for 800a
err:ole:local_server_thread Failure during ConnectNamedPipe 317
This is wine, not R2WinBUGS nor WinBUGS nor R, I fear, and the fixme:
sounds promising that things go away in a more recent version of wine...
Uwe Ligges
R SOURCE FILE:
rm(list=ls(all=TRUE))
library(R2WinBUGS)
inits-function(){
list(alpha0 = 0, alpha1 = 0, alpha2 = 0, alpha12 = 0, sigma = 1)
}
data-list(r = c(10, 23, 23, 26, 17, 5, 53, 55, 32, 46, 10, 8, 10, 8, 23,
0, 3, 22, 15, 32, 3),
n = c(39, 62, 81, 51, 39, 6, 74, 72, 51, 79, 13, 16, 30, 28, 45, 4, 12, 41,
30, 51, 7),
x1 = c(0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1),
x2 = c(0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0,
1, 1, 1, 1, 1),
N = 21)
test-bugs(data,inits,
model.file=/home/meyerjp/rasch/test.bug,
parameters=c(alpha0,alpha1,alpha12,alpha2,sigma),
n.chains=2,n.iter=1,n.burnin=1000,
bugs.directory=/home/meyerjp/.wine/drive_c/Program Files/WinBUGS14/,
working.directory=/home/meyerjp/rasch/working,
debug=FALSE,
WINEPATH=/usr/bin/winepath,
newWINE=TRUE)
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Re: [R] R and mysql
Gabor Grothendieck wrote: To run with R 2.5.1 you need the Windows binary of RMySQL 0.6-0 but I don't think that that is available on either CRAN or BioConductor currently. But on the CRAN extras repository which is provided by Brian Ripley. You can even select it from the menu (and it should be the default). Hence install.packages(RMySQL) shoudl work. Uwe Ligges however, one does exist and I suggest you contact the maintainer, David James or the r-sig-db list. If those don't get it for you send me an email off list and I will send you mine. I have only used the Windows version on XP so I can't say whether there would be any problems on W2k. On 7/22/07, along zeng [EMAIL PROTECTED] wrote: Hi all, I want to visit MySQL in R use RMySQL package on Windows 2k.I got RMySQL and DBI packages from a cran,but only the package RMySQL is built on MasOS.I extracted both and put them under the folder of library,started R and typed string as , require(RMySQL); R told me DBI was loaded,but RMySQL was't loaded because R not found it. Thank very much! along __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] R2WinBUGS awkward to use
[EMAIL PROTECTED] wrote:
Hi All
Does anyone know if I can avoid to use the write.model() function below? I
dont
want to do this. Can't bugs() do that automatically for me just by specifying
the 4th argument 'model'? Just I like I am also using the 'inits' object!
If I use 'model' in the same way as I use 'inits' I am getting the error:
sim - bugs(data, inits, parameters, model, n.chains=1, n.iter=5000,
bugs.directory=c:/Program Files/WinBUGS14, working.directory=NULL,
clearWD=TRUE, DIC=0)
Error in file.exists(c(...)) : invalid 'file' argument
The idea is that people in general write their model files more or less
while interactively using WinBUGS / OpenBUGS and later on start
automizing with R2WinBUGS or BRugs. Then the file already exists.
Of course, we can add dome fancy stuff that applies write.model if an
expression is given in the argument model.
I'll put it on the ToDo list.
Best,
Uwe Ligges
Thanks Toby
data - list(.)
model - function() {
[omitted]
}
write.model(model, cwk.txt)
inits - function() {.}
parameters - c(b, nu, S1, S2)
sim - bugs(data, inits, parameters, cwk.txt, n.chains=1, n.iter=5000,
bugs.directory=c:/Program Files/WinBUGS14, working.directory=NULL,
clearWD=TRUE, DIC=0)
print(sim)
plot(sim)
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Re: [R] how to determine/assign a numeric vector to Y in the cor.test function for spearman's correlations?
G. wrote: Hello to all of you, R-expeRts! I am trying to compute the cor.test for a matrix that i labelled mydata according to mydata=read.csv... then I converted my csv file into a matrix with the mydata=as.matrix(mydata) NOW, I need to get the p-values from the correlations... I can successfully get the spearman's correlation matrix with: cor(mydata, method=s, use=pairwise,complete,obs) but then if I try the cor.test(mydata, method=s, use=pairwise.complete.obs) i always get an error message as follows: the y argument is missing and does not have any default value assigned... (excuse my translation) WHAT SHOULD I DO??? HOW CAN I DEFINE Y AS A NUMERIC VECTOR??? thanx guys, i just can't express myself as a computer would... G :) You have to specify two vectors for the test, e.g.: cor.test(mydata[,1], mydata[,2], method = s, use = pairwise.complete.obs) See the help page ?cor.test Best, Uwe __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Can I test if there are statistical significance between different rows in R*C table?
zhijie zhang wrote: Dear friends, My R*C table is as follow: better good bad Goup1 16 71 37 Group2 0 4 61 Group3 1 6 57 Can I test if there are statistical significant between Group1 and Group2, Group2 and Group3, Group1 and Group2, taking into the multiple comparisons? So what is you hypothesis? Statistical significance of what it to be tested? Uwe Ligges The table can be set up using the following program: a-matrix(data=c(16,71,37,0,4,61,1,6,57),nrow=3,byrow=TRUE) Thanks very much. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] plot centered line on barplot
[EMAIL PROTECTED] wrote: Dear R user, I need plot an histogram for the occurrence of a dataset, and then add a line corresponding to the freuqnecy of another similar dataset. in order to do this i used the function hist_data1=hist(data1, breaks= seq(0,50,5), plot=FALSE) hist_data2=hist(data2, breaks= seq(0,50,5), plot=FALSE) then I plotted the frequency barplot(hist_data1$density) lines(hist_data1$density) barplot() returns the positions on x-axis (these may be non-integers) where it draws the plots, hence you can say: bp - barplot(hist_data1$density) lines(bp, hist_data1$density) but the line is shifted in respect to the center of the bars. how can I properly plot the line? another question. this is easy, how can I smooth the curve (not fit with loess of spline)? If you do not tell us which kind of smoother you prefer Uwe Ligges tnx -- Claudio __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Strange warning in summary.lm
ONKELINX, Thierry wrote: Dear useRs, Lately I noticed a strange warning in the summary of a lm-object. Any idea what this warning is about? I'm using R 2.5.1 on Win XP pro. x - rnorm(100) y - rnorm(100) summary(lm(y~x)) Call: lm(formula = y ~ x) Residuals: Min 1Q Median 3Q Max -1,77809 -0,68438 -0,04409 0,63891 2,30863 Coefficients: Estimate Std. Error t value Pr(|t|) (Intercept) -0,002170,09244 -0,0230,981 x0,013150,09628 0,1370,892 Residual standard error: 0,9236 on 98 degrees of freedom Multiple R-Squared: 0.0001903, Adjusted R-squared: -0.01001 F-statistic: 0.01866 on 1 and 98 DF, p-value: 0,8916 Warning message: NAs introduced by coercion in: as.double.default(Cf[okP]) Probably you have an object in your workspace or another attached environment in the search path that conflicts with objects that are required to call summary(lm(...)). E.g. some lm... oder summary... function? Best, Uwe Ligges Thanks, Thierry ir. Thierry Onkelinx Instituut voor natuur- en bosonderzoek / Research Institute for Nature and Forest Cel biometrie, methodologie en kwaliteitszorg / Section biometrics, methodology and quality assurance Gaverstraat 4 9500 Geraardsbergen Belgium tel. + 32 54/436 185 [EMAIL PROTECTED] www.inbo.be Do not put your faith in what statistics say until you have carefully considered what they do not say. ~William W. Watt A statistical analysis, properly conducted, is a delicate dissection of uncertainties, a surgery of suppositions. ~M.J.Moroney __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Strange warning in summary.lm
Ah, in printCoefmat() there is Cf which is at some point: Cf Estimate Std. Error t value Pr(|t|) (Intercept) 0,2542 0,1875 1,356 x -0,5346 0,3463 -1,544 and cat(Cf) 0,2542 -0,5346 0,1875 0,3463 1,356 -1,544 (i.e. values are character) and then x0 - (xm[okP] == 0) != (as.numeric(Cf[okP]) == 0) includes as.numeric(Cf[okP]) which won't work any more. I think this design is not the best possible. Nevertheless, the real problem is in format(), because it does not use its default `decimal.mark = .' if options(OutDec = ,) has been set, and even ignores manual chosen values: # nice: options(OutDec = .) format(0.1, decimal.mark = :) # [1] 0:1 # bug: options(OutDec = ,) format(0.1, decimal.mark = :) # [1] 0,1 Best, Uwe ONKELINX, Thierry wrote: Dear Peter, Here's an example. Notice the warning in the last two lines of the summary with options(OutDec = ,). It's not present with options(OutDec = .). Cheers, Thierry x - runif(100) y - rnorm(100) options(OutDec = ,) summary(lm(y~x)) Call: lm(formula = y ~ x) Residuals: Min1QMedian3Q Max -2,389749 -0,607002 0,006969 0,689535 1,713197 Coefficients: Estimate Std. Error t value Pr(|t|) (Intercept) 0,033970,17774 0,1910,849 x -0,092190,29518 -0,3120,755 Residual standard error: 0,868 on 98 degrees of freedom Multiple R-Squared: 0.0009943, Adjusted R-squared: -0.0092 F-statistic: 0.09754 on 1 and 98 DF, p-value: 0,7555 Warning message: NAs introduced by coercion in: as.double.default(Cf[okP]) options(OutDec = .) summary(lm(y~x)) Call: lm(formula = y ~ x) Residuals: Min1QMedian3Q Max -2.389749 -0.607002 0.006969 0.689535 1.713197 Coefficients: Estimate Std. Error t value Pr(|t|) (Intercept) 0.033970.17774 0.1910.849 x -0.092190.29518 -0.3120.755 Residual standard error: 0.868 on 98 degrees of freedom Multiple R-Squared: 0.0009943, Adjusted R-squared: -0.0092 F-statistic: 0.09754 on 1 and 98 DF, p-value: 0.7555 ir. Thierry Onkelinx Instituut voor natuur- en bosonderzoek / Research Institute for Nature and Forest Cel biometrie, methodologie en kwaliteitszorg / Section biometrics, methodology and quality assurance Gaverstraat 4 9500 Geraardsbergen Belgium tel. + 32 54/436 185 [EMAIL PROTECTED] www.inbo.be Do not put your faith in what statistics say until you have carefully considered what they do not say. ~William W. Watt A statistical analysis, properly conducted, is a delicate dissection of uncertainties, a surgery of suppositions. ~M.J.Moroney -Oorspronkelijk bericht- Van: Peter Dalgaard [mailto:[EMAIL PROTECTED] Verzonden: donderdag 19 juli 2007 13:37 Aan: ONKELINX, Thierry CC: Uwe Ligges; r-help@stat.math.ethz.ch Onderwerp: Re: [R] Strange warning in summary.lm ONKELINX, Thierry wrote: The problem also exists in a clean workspace. But I've found the troublemaker. I had set options(OutDec = ,). Resetting this to options(OutDec = .) solved the problem. Thanks, Thierry Oups. That sounds like there's a bug somewhere. Can you cook up a minimal example which shows the behaviour? -- O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907 __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Subsetting dataframes
CG Pettersson wrote:
Dear all!
W2k, R 2.5.1
I am working with an ongoing malting barley variety evaluation within
Sweden. The structure is 25 cultivars tested each year at four sites, in
field trials with three replicates and 'lattice' structure (the replicates
are divided into five sub blocks in a structured way). As we are normally
keeping around 15 varieties from each year to the next, and take in 10 new
for next year, we have tested totally 72 different varieties during five
years.
I store the data in a field trial database, and generate text tables with
the subset of data I want and import the frame to R. I take in all
cultivars in R and use 'subset' to select what I want to look at. Using
lme{nlme} works with no problems to get mean results over the years, but
as I now have a number of years I want to analyse the general site x
cultivar relation. I am testing AMMI{agricolae} for this and it seems to
work except for the subsetting. This is what happens:
If I do the subsetting like this:
x62_samvar - subset(x62_5, cn %in%
c(Astoria,Barke,Christina,Makof, Prestige,Publican,Quench))
A test run with AMMI seems to work in the first part:
AMMI(site, cn, rep, yield)
ANALYSIS AMMI: yield
Class level information
ENV: Hag Klb Bjt Ska
GEN: Astoria Prestige Makof Christina Publican Quench
REP: 1 2 3
Number of observations: 240
model Y: yield ~ ENV + REP%in%ENV + GEN + ENV:GEN
Analysis of Variance Table
Response: Y
DfSum Sq Mean Sq F valuePr(F)
ENV 3 120092418 40030806 90.0424 1.665e-06 ***
REP(ENV)8 3556620444578 0.5674 0.803923
GEN 5 21376142 4275228 5.4564 9.680e-05 ***
ENV:GEN15 28799807 1919987 2.4504 0.002555 **
Residuals 208 162973213783525
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
Coeff var Mean yield
13.08629 6764.098
After this something goes wrong, as AMMI finds a cultivar name not
selected in the subsetting. (The plotting might go wrong anyhow, but I
haven´t got that far yet):
Error in model.frame.default(Terms, newdata, na.action = na.action, xlev =
object$xlevels) :
factor 'y' has new level(s) Arkadia
Looking at the dataframe using
edit(x62_samvar)
only shows the selected lines, but using levels() gives another answer as
levels(x62_samvar$cn)
gives back all 72 cultivar names used during the five years (starting with
Arcadia).
Where do I go wrong and how do I use subset in a proper way?
So you have to drop the levels you are excluding. Example:
x - factor(letters[1:4])
x
x[1:2]
x[1:2, drop=TRUE]
Uwe Ligges
Thanks
/CG
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Re: [R] Error: evaluation nested too deeply when doing heatmap with binary distfunction
zhihua li wrote: Hi netters, I have a matrix X of the size (1000,100). The values are from -3 to +3. When I tried heatmap(X, distfun=function(c),dist(c,method=bin),hclustfun=function(m),hclust(m,method=average)) I got the error message: Error: evaluation nested too deeply: infinite recursion / options(expressions=)? So, does it help to increase the thresholds? If not, please specify a easily reproducible example that helps us to investigate your problem. Best, Uwe Ligges However, if I used default parameters for distfunction: heatmap(X, hclustfun=function(m),hclust(m,method=average)) there is no error messages at all. But the problem is that I have to use binary method in my disfunction. How can I resolve the problem? Thanks a lot! __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] df manipulation
Nikola Markov wrote: I have multicolumn data.frames with the first comumn giving ordinal observation index ( ex.: 1 4 7 9 11 13 etc). I would like to fill up the missing observations (i.e. 2 3 5 6 8 etc) with NAs. Please specify reproducible examples, they make it much easier to help! If you have: df - data.frame(index = c(1, 4, 7), x1 = 1:3, x2 = 3:1) df Then you can say: temp - data.frame(index = 1:max(df$index)) df - merge(temp, df, all.x = TRUE) df Uwe Ligges Thank you __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] filter out observation by condition
sigalit mangut-leiba wrote: hello, I have a longitudinal data: idn mort30 newinfec 1 0 1 1 0 1 1 0 1 1 0 1 2 1 1 2 1 1 2 1 1 3 0 0 3 0 0 3 0 0 3 0 0 3 0 0 and i want to filter out those obs. that has mort30==1 (mort30 is constant over idn). how can i use if...else and filter out those unwanted obs.? I appriciate the help, sigalit. subset(data, mort30 != 1) Uwe Ligges [[alternative HTML version deleted]] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] HELP FOR BUGS
Ali raza wrote: Hi Sir I am very new user of R for the research project on multilevel logistic regression. There is confusion about bugs() function in R Do you mean bugs() from package R2WinBUGS? Yes, it is related to the software WinBUGS 1.4.x (and OpenBUGS 2.x with package BRugs). Uwe Ligges and BUGS software. Is there any relation between these two? Is there any comprehensive package for Multilevel Logistic modelling in R? Please guide in this regard. Thank You RAZA - Boardwalk for $500? In 2007? Ha! [[alternative HTML version deleted]] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] multiple plots in a graph
Ajay Singh wrote: Hi, I have to generate 10 cdfs in a graph. I need to compare the cdf's nature by plotting ten cdfs in a graph. Thus, I need multiple plots in a graph. I would appreciate if you could give some solution to the problem asap. plot(ecdf(rnorm(10))) plot(ecdf(rnorm(12)), add=TRUE, col.points=red, col.hor=red) etc... Uwe Ligges Thanking you, Sincerely, Ajay. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] adding latex, html docs. to new packag
Edna Bell wrote: Hi again! How do I create the Latex and HTML files for documentation for a new package, please? Is there something in the R CMD stuff that would do it, or do I need to produce by hand, pleaes? As the manual Writing R Extensions suggests, please write your documentation in the Rd format. Those files are converted automatically to latex and html (among other format) when the package is installed. Skeletons for the help files can be generated using prompt() or for a whole package, see ?package.skeleton. Uwe Ligges thanks, eb __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Writing Excel (.xls) files on non-Windows OSs using Perl
Gabor Grothendieck wrote: Note that there already is a function, read.xls, in gdata that uses Perl. Note that Marc talked about *writing* in his original message. Uwe Ligges On 7/9/07, Marc Schwartz [EMAIL PROTECTED] wrote: On Mon, 2007-07-09 at 16:42 +0300, Hans-Peter wrote: Hi, 2007/7/8, Marc Schwartz [EMAIL PROTECTED]: [snip] There exists the xlsReadWrite package on CRAN by Hans-Peter Suter, which is restricted to Windows, since it utilizes the non-FOSS MS Office API to write the Excel formats. The non-FOSS API is not the problem(#) but its implementation is: The 3rd party library I use is written in Pascal and supports Delphi and Kylix. Kylix would allow to port the package to Linux but as Kylix has unfortunately been abandoned by CodeGear (Borland) I am not ready/interested to spend my time on this dead road. Though it probably could be done quickly. A much more interesting way is to port the package using FreePascal. -- I plan to do this since long but... -- Maybe someone fluent on Linux and FreePascal could have a look at the pascal header files (treetron.googlepages.com) and make the demos run on Linux..., that would be great and speed up an eventual xlsReadWrite port! Thanks for the clarification. However, I think that if you are going to pursue a cross-platform solution, providing source code requiring compilation (as opposed to a pre-compiled Windows binary), you should consider what the installation requirements for your package would then be. If you are going to take the step of requiring a prospective end-user to have a particular Pascal compiler in place, you may as well have the requirement for a Perl interpreter and associated packages. Since Perl is widely available and you are more likely to find Perl-fluent coders as opposed to Pascal-fluent coders (eg. I have not used Pascal since the late 80's), I would urge you to consider Perl as a future substrate for your functions. While compiled code will run faster than interpreted code, for these types of file I/O functions, I am not sure that you lose much with Perl from a performance standpoint and you certainly gain the eyes of a wider audience with respect to use, debugging and enhancements. To that end, you (or any other interested parties) are free to utilize my code in any way you deem appropriate. I did not state this in my original post, but I make the code available under GPL(v2), freeing you from any restrictions in its use, including your Pro version, as long as you make the source available in a fashion consistent with the GPL requirements. Regards, Marc Schwartz __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] calculating p-values of columns in a dataframe
Thomas Pujol wrote:
I have a dataframe (mydf) that contains differences of means.
I wish to test whether these differences are significantly different from
zero.
Below, I calculate the t-statistic for each column.
What is a good method to calculate/look-up the p-value for each column?
mydf=data.frame(a=c(1,-22,3,-4),b=c(5,-6,-7,9))
mymean=mean(mydf)
mysd=sd(mydf)
mynn=sapply(mydf, function(x) {sum ( as.numeric(x) = -Inf) })
myse=mysd/sqrt(mynn)
myt=mymean/myse
myt
You can do the whole lot with
L - lapply(mydf, t.test)
or if you only want the t statistics and p-values now:
sapply(L, [, c(statistic, p.value))
If you want to follow your initial approach quickly, you can calculate
the probability function of the t distribution with 3 degrees of freedom
(for your data) with
2 * pt(-abs(myt), df = nrow(mydf) - 1)
Uwe Ligges
-
Food fight? Enjoy some healthy debate
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Re: [R] Windows Binary for ncdf package
amna khan wrote: Dear Sir There is no window binary version of package ncdf in the latest release of R 2.5.1. i dont have any information about the old versions. Please guid in thie regard Thank you See the ReadMe in the CRAN repository. It tells you that ncdf does not build out of the box on Windows and is hence not available on CRAN. Nevertheless, Brian kindly provides the binary in his CRAN (extras) repository (URL http://www.stats.ox.ac.uk/pub/RWin). Just type install.packages(ncdf) and it will be installed ... Uwe Ligges __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Recursion in R ...
Alberto Monteiro wrote:
Ted Harding wrote:
So I slickly wrote a recursive definition:
Nnk-function(n,k){
if(n==1) {return(k)} else {
R-0;
for(r in (1:k)) R-(R+Nnk(n-1,k-r+1)) # ,depth))
}
return(R)
}
You are aware that this is equivalent to:
Nnk1 - function(n, k) { prod(1:(n+k-1)) / prod(1:n) / prod(1:(k-1)) }
or
Nnk2 - function(n, k) { gamma(n+k) / gamma(n+1) / gamma(k) }
or most easily:
Nnk3 - function(n, k) choose(n+k-1, n)
Uwe Ligges
aren't you?
ON THAT BASIS: I hereby claim the all-time record for inefficient
programming in R.
Challengers are invited to strut their stuff ...
No, I don't think I can bet you unintentionally, even though
my second computer program that I ever wrote in life had to be
aborted, because it consumed all the resources of the computer.
Alberto Monteiro
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Re: [R] Problem/bug with smooth.spline and all.knots=T
Hubertus wrote: Dear list, if I do smooth.spline(tmpSec, tmpT, all.knots=T) with the attached data, I get this error-message: Note that you cannot attach data that way. You migth want to upload it to some web space and send us the link. Uwe Ligges Error in smooth.spline(tmpSec, tmpT, all.knots = T) : smoothing parameter value too small If I do smooth.spline(tmpSec[-single arbitrary number], tmpT[-single arbitrary number], all.knots=T) it works! I just don't see it. It works for hundrets other datasets, but not for this one. Would be glad if anyone could help! Hubertus __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Is it a bug ?
I don't get your point, because exp(-(-3)^2.2) [1] NaN is correct. A negative value to the power of a non-integer is undefined in IR. Of course it is defined as a complex number: exp(-(-3+0i)^2.2) [1] 1.096538e-04-3.47404e-05i Uwe Ligges Giuseppe PEDRAZZI wrote: [[diverted from R-bugs to R-help by the list maintainer]] Dear Friend and distinguished R gurus, first of all really thank you very much for the marvellous tool that is R. I am using R 2.5.0, windows XP - italian language. I was perfoming some calculation on fractional exponential and I found a strange behaviour. I do not know if it is really a bug, but I would expect a different answer from R. I was trying the following : x - seq(-3,3, by =0.1) n - 2.2 y - exp(-x^n) well, the y vector contains (NaN for all negative value of x) but if you ask for single value calculation like y - exp(-(-3)^2.2) or y - exp(-(-2.9)^2.2) the answer is correct. It seem it does not make the calculation in vector form. I got the same behaviour (NaN) in a for loop for(i in 1:length(x)) y[i]=exp(x[i]^n) y [1] NaN NaN NaN NaN NaN NaN NaN NaN NaN [10] NaN NaN NaN NaN NaN NaN NaN NaN NaN [19] NaN NaN NaN NaN NaN NaN NaN NaN NaN [28] NaN NaN NaN 1.00 1.006330 1.029416 1.073302 1.142488 1.243137 [37] 1.384082 1.578166 1.844237 2.210260 2.718282 3.432491 4.452553 5.936068 8.137120 [46]11.47374616.64841524.86768038.25129560.611092 98.967689 166.572985 289.08 517.425935 [55] 955.487320 1820.793570 3581.521323 7273.674928 15255.446778 33050.861013 73982.100407 Is it strange or did I miss something ? Many thanks for the attention. Very best regards Giuseppe Pedrazzi Dept Public Health, Physics Division University of Parma, Italy [[alternative HTML version deleted]] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] The R Book by M. J. Crawley
Pietrzykowski, Matthew (GE, Research) wrote: Hello all- I would appreciate any guidance that can be provided. I am new to R and am using it exclusively in a statistics program I am undertaking that mainly references Minitab. My focus is on data modeling and further more multivariate data analysis as much of my work in involves chemical measurements from custom sensors using all sorts of transduction methods. I am looking for a reference that has sound statistical foundations with relevant R commands as well as multivariate support. I saw the new book, The R Book, by Michael J. Crawley and wanted to know what R users thoughts of it. The author seems to be an expert in (almost?) all available statistical programming languages and able to write almost 1000 pages about these languages. He also seems to be a perfect R programmer, since the title is The R book. Uwe Ligges Thanks in advance, Matt [[alternative HTML version deleted]] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Search a function name in a string
NOEL Yvonnick wrote: Hello, I am trying to find a function name in a string that expresses a functional form : s = blabla...S(var)...blabla I would like to detect the pattern S(*) in s. I am no guru at regular expressions. Just tried : grep(S(.*),c(S(a),CSP)) grep(S\\(.*\\),c(S(a),CSP)) Uwe Ligges [1] 1 2 I expected the pattern to be retrieved only in the first string, so obviously this is not correct. Any idea ? Thank you very much in advance, Yvonnick Noel, PhD U. of Rennes 2 France __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Determining whether a function's return value is assigned
Paul Laub wrote:
Dear all,
Does R offer a means by which a function can determine
whether its return value is assigned? I am using R
2.4.1 for Windows.
Short answer: No.
Long answer: You want to have a class for the object called bigobject
below and a print/show method that provides the summary for objects of
that class.
Uwe Ligges
Suppose what I am looking for is called
return.value.assigned. Then one might use it like
this
myfunction - function () {
# Create bigobject here
if (return.value.assigned()) {
bigobject
} else {
summary(bigobject)
}
}
and
x - myfunction() # bigobject is assigned
myfunction() # summary of bigobject is printed
Octave and MATLAB have the nargout function that does
what I want, and Perl has the wantarray function
detecting the context in which a function is called.
Perhaps match.call() can be made to do what I want,
but, if so, I don't see it in reading the
documentation.
Sincerely,
Paul Laub
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Re: [R] R CMD INSTALL in R 2.5.1 (2007-06-27)
Fredrik Lundgren wrote: Hello, I'm moving from R 2.2.1 (Winows XP) to R 2.5.1 and have problems with installing myfuncs, which worked OK in 2.2.1 R CMD INSTALL myfuns # gives installing to '' Have you set an environment variable such as R_LIBS that is rather than a sensible directory? (my guess) Are all the tools up to date? Do you have another library (except the standard one) defined anywhere? Can you source() all the R files in your package separately in R-2.5.1? Uwe Ligges -- Making package myfuncs adding build stamp to DESCRIPTION installing R files installing man source files installing indices installing help Building/Updating help pages for package 'myfuncs' Formats: text html latex example chm Bland.plottexthtmllatex example Cook.plot texthtmllatex example added.var.plottexthtmllatex example jit.plot texthtmllatex example waldtest texthtmllatex example preparing package myfuncs for lazy loading Warning in list.files(lib, pattern = paste(^, pkg_regexp, sep = ), full = TR UE) : list.files: '' is not a readable directory Error in findpack(package, lib.loc) : there is no package called 'myfuncs' Execution halted make: *** [lazyload] Error 1 *** Installation of myfuncs failed *** Removing '/myfuncs' # end installing to '' at the start appears to be the problem I have install Rtools 2.5.1 appropriately ( I hope) my PATH looks like this: PATH=C:\Program\Rtools\MinGW\bin;C:\Program\R\Rtools\bin;c:\program\imagemagick- 6.1.8-q16;C:\Program\TeXLive\bin\win32;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS \system32\WBEM;C:\Program\Aspell\bin;C:\Program\Perl\bin\;C:\Program\HTML Help W orkshop;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\Program\ATI T echnologies\ATI Control Panel;C:\Program\R\R-2.5.1\bin;C:\Program\sp2000\cmd;C:\ Program\XEmacs\XEmacs-21.4.13\i586-pc-win32;C:\Program\gnuplot\bin;C:\Program\Ma yura;C:\Program files\WinEdt Team\WinEdt;C:\Program\Internet Explorer;;C:\Progra m\WinBUGS;C:\Program\Adobe\Acrobat 7.0\Reader;C:\Program\QuickTime\QTSystem\ To me looks as if R don't know where to install - any help available? Sincerely Fredrik Lundgren __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Installing packages.
Marcus Vinicius wrote: Dear, I'm not getting Installing packages: install.packages(c(exactRankTests)) trying URL `http://cran.r-project.org/bin/windows/contrib/2.0/PACKAGES' Content type `text/plain' length 26129 bytes opened URL downloaded 25Kb This means you are using R-2.0.x? This is really ancient. Please upgrade to a more recent version of R. Before using function from the installed package, you have to load it: library(exactRankTests) Uwe Ligges trying URL `http://cran.r- project.org/bin/windows/contrib/2.0/exactRankTests_0.8-10.zip' Content type `application/zip' length 187723 bytes opened URL downloaded 183Kb package 'exactRankTests' successfully unpacked and MD5 sums checked Delete downloaded files (y/N)? y updating HTML package descriptions ? exactRankTests No documentation for 'exactRankTests' in specified packages and libraries: you could try 'help.search(exactRankTests)' How do I do? Thanks a lot. Marcus Vinicius [[alternative HTML version deleted]] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] R-2.5.1 problem listing dataframe in GUI/CMDLINE
Roy Wilson wrote: I have a dataframe called hawk. Source file looks ok. read.table seems ok. Can view using R editor. Again looks fine. Now, I am new to windows version of R. When I type in 'hawk' under Linux, I expect to see the rows listed. That isn't happening, as shown below. attach(hawk) hawk Error in print.matrix(as.matrix(format.data.frame(x, digits = digits, : 7 arguments passed to 'print.default' which requires 9 Tried this first in 2.5.0. Then installed 2.5.1, tried in both in R GUI and R Cmdline. same result. Is this a bug or a mind bug of mine? :-) Quite probably you are using a new version (R-2.5.x) of R but mixing it with some packages for a less recent version of R. Do you have some base packages for less recent version of R installed in a non-standard library that is in the search path? .libPaths() should reveal other libraries. Uwe Ligges __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] About Memory size
Ferdouse Begum wrote: Hi, I am trying to analyse cancer data set (affymetrix) by using bioconductor packages. I have total 14 data set. Total size of the data set is 432MB. Do you mean it comsumes 432MB to have the data in R or in some format on the harddisc? Do you need to work on the whole datasets at once? Have you read the manuals and FAQs (there are sections about memory!!!)? Now I am trying to analyse these data sets in my PC with RAM 512. But If you need 432MB just to have the data available in R, then you should have *at least* 1GB of RAM in your machine, and for certain function, you might need much more. Hence the advise is to rethink how to reduce the problem or to buy 2GB of RAM for your machine (which is advisable in any case, because RAM is cheap and thinking hurts). We have upgraded all of our computer labs to at least 1GB these days. Uwe Ligges if I want to get MAplot of my data set, I am getting the messege ( MAplot(ptc.rawData) Error: cannot allocate vector of size 73.8 Mb In addition: Warning messages: 1: Reached total allocation of 503Mb: see help(memory.size) 2: Reached total allocation of 503Mb: see help(memory.size) 3: Reached total allocation of 503Mb: see help(memory.size) 4: Reached total allocation of 503Mb: see help(memory.size)) Now how can I get rid of this problem? pls help. With thanks Ferdouse __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] [R-pkgs] RGtk2 2.10.x series available
Prof Brian Ripley wrote:
Did you not get a dialog box with further details?
Unfortunately I found no instructions. You need a version of of Gtk2
installed that is at least as late as the Windows maintainer used to
build RGtk2, as it adapts to the version installed. I don't know what
that is and had to update mine.
http://downloads.sourceforge.net/gladewin32/gtk-2.10.11-win32-1.exe?download
is the latest available, and sufficed for me.
Uwe: could you add a note to the Readme, please, with the version
requirement?
Thanks for the hint. I'll do so this afternoon.
Uwe
On Thu, 21 Jun 2007, Giulio Barcaroli wrote:
I installed version 2.10.9-1 of RGtk2, but when I tried to load it I
received the following message:
local({pkg - select.list(sort(.packages(all.available = TRUE)))
+ if(nchar(pkg)) library(pkg, character.only=TRUE)})
Error in dyn.load(x, as.logical(local), as.logical(now)) :
unable to load shared library
'C:/Programmi/R/R-2.5.0/library/RGtk2/libs/RGtk2.dll':
LoadLibrary failure: impossible to find the specified procedure
Error: package/namespace load failed for 'RGtk2'
I checked in the directory
C:/Programmi/R/R-2.5.0/library/RGtk2/libs/
and the RGtk2.dll module does exist.
Any indication about how to solve this problem?
Giulio Barcaroli
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Re: [R] Got Unexpected ELSE error
Shiazy Fuzzy wrote:
Dear R-users,
I have a problem with the IF-ELSE syntax.
Please look at the folllowing code and tell me what's wrong:
a - TRUE
if ( a )
{
cat(TRUE,\n)
}
At this point, the expression above is complete and it ios evaluated if
called interactively.
Then, the code below is invalid (there is nothing that starts with else).
else
{
cat(FALSE,\n)
}
Instead, use:
a - TRUE
if ( a )
{
cat(TRUE,\n)
} else
{
cat(FALSE,\n)
}
Uwe Ligges
If I try to execute with R I get:
Error: syntax error, unexpected ELSE in else
The strange thing is either cat instructions are executed!!
My system is: Fedora Core 6 x86_64 + R 2.5.0 (rpm)
Thank you very much in advance
Regards,
-- Marco
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and provide commented, minimal, self-contained, reproducible code.
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
