Re: [R] Bug in R 2.4.1 ?

2007-04-24 Thread Sebastian Weber
Hi! Replying to my own post: Thanks Duncan for your hint to try the newest version! I did not think of this in the first place as I'm using the newest Ubuntu feisty fawn release which got released a couple of days ago. Nevertheless, the r-cran-hdf5 package is outdated and the newest one available

[R] inner loop problem!?

2007-04-24 Thread Christian Schulz
Hi, i have 656 attributes ind INTERVALL_VAR 119 in GROUP and this morning i'm little confused why the inner loop hang if it arrive 656th column. My Task is a t-test and correlation with all columns in INTERVALL_VAR for all attributes in GROUP. many thanks regards, christian for( k in

[R] read.table

2007-04-24 Thread elyakhlifi mustapha
sorry, I don't undersatnd what happens Annee_O;Id_Essai;Id_Rep;Id_Geno;Id_Cult;Lib_Geno;St_Cult;Id_Par;X_Par;Y_Par;Id_Cara;Surf_O;Val_O;Ori_O;Stade_O;Date_O;Id_Bloc;Id_TrT1 2004;1006003;1;55094;1012988;XF 338/1;;1;1;1;137;;9.4;P;;09/09/2004;1;0 2004;1006003;1;55094;1012988;XF

Re: [R] Changing working directory

2007-04-24 Thread Martin Maechler
Petr == Petr Klasterecky [EMAIL PROTECTED] on Mon, 23 Apr 2007 14:27:03 +0200 writes: Petr Hi, Petr you seem to have mixed 2 different things: Petr 1) changing a working directory - see ?setwd, ?getwd Petr However, this will NOT load another .Rdata file. Petr 2) loading

Re: [R] importing excel-file#caveat clipboard

2007-04-24 Thread christian.ritter
Just a little caveat concerning the use of the clipboard to transfer data from excel to R: If I remember right, at least up to Excel 2003, copying data from a worksheet (Edit/Copy) to the windows clipboard, copies the data in the number format in which they are seen in Excel. That is, if you

Re: [R] inner loop problem!?

2007-04-24 Thread Christian Schulz
Hi, i understand my problem , because i overwrite my result's from previous loop's again and agian, really stupid :-] regards, christian Hi, i have 656 attributes ind INTERVALL_VAR 119 in GROUP and this morning i'm little confused why the inner loop hang if it arrive 656th column. My

Re: [R] high resolution plot tick problems

2007-04-24 Thread Prof Brian Ripley
You will do better to use e.g. bitmap() and bitmap the output at 600 dpi, if that is what you are aiming at. The default line width will be 1/96. You haven't told us what OS 'my PC' is running, but people who say that usually mean Windows. On the Windows' png device the default line width

Re: [R] read.table

2007-04-24 Thread Peter Dalgaard
elyakhlifi mustapha wrote: sorry, I don't undersatnd what happens Annee_O;Id_Essai;Id_Rep;Id_Geno;Id_Cult;Lib_Geno;St_Cult;Id_Par;X_Par;Y_Par;Id_Cara;Surf_O;Val_O;Ori_O;Stade_O;Date_O;Id_Bloc;Id_TrT1 2004;1006003;1;55094;1012988;XF 338/1;;1;1;1;137;;9.4;P;;09/09/2004;1;0

[R] information extraction

2007-04-24 Thread Schmitt, Corinna
Dear R-experts, I imported successful a workspace from Matlab. The information is stored in the variable data. If I use the command length(data) I get back a number which corresponds to the number of variables which were imported. Here it is 82. Now I only want to know the names of the imported

[R] Question about SAMR

2007-04-24 Thread Isabelle Rivals
I have a question regarding the samr package. For a 2 class unpaired problem, with sample 1 of size N1 and sample 2 of size N2, samr computes at most (N1+N2)! permutations of the two samples (if the user-supplied parameter nperms allows it). However, there are only (N1+N2)/(N1!*N2!) DISTINCT

Re: [R] information extraction

2007-04-24 Thread Schmitt, Corinna
Hallo Peter, thank you. It is exact what I wanted. Now I can modify my program. Corinna Von: Peter Konings [mailto:[EMAIL PROTECTED] Gesendet: Dienstag, 24. April 2007 10:55 An: Schmitt, Corinna Betreff: Re: [R] information extraction Hi Corinna,

[R] [R-pkgs] new version of seqinR

2007-04-24 Thread Simon Penel
Dear useRs, The seqinR package is a library of utilities to retrieve and analyse biological sequences. A new version of seqinR, seqinR 1.0-7, has been released on CRAN. Here is a summary of changes: o A new *experimental* function extractseqs() to download sequences thru zlib compressed

[R] statistical modelling skill

2007-04-24 Thread justin bem
Dears helpers, I have a question not specially about R, but about statistical modelling. This is the problem, I want to conduct a regression analysis to explain the causes of students fail in an exam. I have two variables the score obtain at the exam and the categorical variable coding 0 in

[R] (no subject)

2007-04-24 Thread elyakhlifi mustapha
I wanna display some data which there are subsets of a dataframe called don but there are errors like this L=as.numeric(levels(factor(don$Id_Cara))) for(i in L){ + donC(i)=subset(don, Id_Cara == i, select = c( Id_TrT1, Id_Geno, Id_Rep, Val_O)) + donC(i) + } Erreur dans donC(i) = subset(don,

[R] Odp: (no subject)

2007-04-24 Thread Petr PIKAL
Hi you shall: use appropriate subject e.g. how to subset data use [ ] brackets initialize object donC before using it for assignment and maybe try to look to some docummentation how to manipulate R objects (Paul Johnsons R tips are easily found by Google and they help me a lot during my first

Re: [R] (no subject)

2007-04-24 Thread jim holtman
Are you trying to create a 'list' of the subsets? If so, try: L=as.numeric(levels(factor(don$Id_Cara))) donC - list() for(i in L){ donC[[i]] - subset(don, Id_Cara == i, select = c( Id_TrT1, Id_Geno, Id_Rep, Val_O)) print(donC[[i]]) } Or better using the 'names' of the factors L -

[R] problem in tapply command

2007-04-24 Thread temiz
hello when I entered following command, I got NA values for some catagories. tapply(slp_jeo2$slp,slp_jeo2$jeo,mean ) 999 Ca Cka DCy Jh JKi Kk 14.06665 NA 14.60445 NA NA NA NA NA KTa KTac Ku

[R] R 2.5.0 is released

2007-04-24 Thread Peter Dalgaard
I've rolled up R-2.5.0.tar.gz a short while ago. This is a development release which contains a number of new features. In particular: - Object name completion by integration of package 'rcompletion' by Deepayan Sarkar - New recommended package 'codetools' by Luke Tierney - New

Re: [R] problem in tapply command

2007-04-24 Thread Riley, Steve
Ahmet, Try the following syntax: tapply(slp_jeo2$slp,slp_jeo2$jeo,mean, na.rm = T) Steve -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of temiz Sent: Tuesday, April 24, 2007 1:22 PM To: r-help@stat.math.ethz.ch Subject: [R] problem in tapply command

Re: [R] problem in tapply command

2007-04-24 Thread Dimitris Rizopoulos
probably you're looking for tapply(slp_jeo2$slp, slp_jeo2$jeo, mean, na.rm = TRUE) Best, Dimitris Dimitris Rizopoulos Ph.D. Student Biostatistical Centre School of Public Health Catholic University of Leuven Address: Kapucijnenvoer 35, Leuven, Belgium Tel: +32/(0)16/336899 Fax:

Re: [R] How to get LSMEANS from linear mixed model?

2007-04-24 Thread Chuck Cleland
Yannan Jiang wrote: Hi there, I am trying to run simulations using R with linear mixed model (lme). There are two factors in my fixed effect model, educ (treatment and control) and mth (visit 1, 2, and 3). What I want to obtain is the estimated treatment difference (treatment -

[R] Re : statistical modelling skill

2007-04-24 Thread justin bem
Thank, Jim to look to my post . I dont explain pass/fail by the exam score but I want to explain both of them by a set of explanotory variables. y_{i}=a_{0}+\sum_{i}a_{i}x_{i} or P(z_{i}=k)=F(a_{0}+\sum_{i}a_{i}x_{i}) z_{i}=1(c_{k}yc_{k+1} I want to know if there is a

[R] Re : (no subject)

2007-04-24 Thread justin bem
Mustapha, donC is not a function if it is a list write donC[[i]] or donC[i] for indexing Justin BEM Elève Ingénieur Statisticien Economiste BP 294 Yaoundé. Tél (00237)9597295. - Message d'origine De : elyakhlifi mustapha [EMAIL PROTECTED] À : R-help@stat.math.ethz.ch Envoyé le :

[R] from R to html

2007-04-24 Thread elyakhlifi mustapha
hello, If I wanna export data.frame from R to html have you got some ideas to do this? ___ [[alternative HTML version deleted]] __ R-help@stat.math.ethz.ch

Re: [R] from R to html

2007-04-24 Thread Henrique Dallazuanna
Use the package R2HTML. -- Henrique Dallazuanna Curitiba-Paraná-Brasil 25° 25' 40 S 49° 16' 22 Ohttp://maps.google.com/maps?f=qhl=enq=Curitiba,+Brazillayer=ie=UTF8z=18ll=-25.448315,-49.276916spn=0.002054,0.005407t=kom=1 On 4/24/07, elyakhlifi mustapha [EMAIL PROTECTED] wrote: hello, If I

[R] Calculating means in a new table

2007-04-24 Thread Dieter Wirz
Dear all - I imported (on a Mac) a big table with 2000 lines: mydata - read.table(file(/Users/didiw/Desktop/R/all.txt), header = TRUE) mydata[1:15,] location Spezies Spec E.MPa. Phi No Trial 1LC PJ 13.27 7.51 1 1 2LC PJ 14.24 6.68 1 1

[R] Handling of arrays

2007-04-24 Thread laptopcss
Dear R-Experts, I just imported a workspace from Matlab. I know that I can get the names of the imported variables with names(). It works. The variable ca consists of several elements. I want to get the names of the elements to handle my output better. But names(ca) doesn't work. Why? I did

[R] Kernel

2007-04-24 Thread Oriana Caldera
I'm a new user of R-packages. I'm in need of information with regard to Stochastic Kernel. I would like to know if I can use R to compute stochastic Kernels according to Quah methodology. Best wishes, Oriana - -

Re: [R] Calculating means in a new table

2007-04-24 Thread Petr PIKAL
Hi look at aggregate something like mymean-aggregate(mydata[,4:5], list( location, Spezies), mean) mysd-aggregate(mydata[,4:5], list( location, Spezies), sd) and then cbind(appropriate columns of resulting data frames) Petr Pikal [EMAIL PROTECTED] [EMAIL PROTECTED] napsal dne

[R] Problem with length of array while calling C from R

2007-04-24 Thread Sven Knüppel
Hello, my problem is that I don't know how long must be an array of double while calling C from R. R-Code: array - c(1,1,1) save - .C ( Ctest , a = array ) C-Code: void Ctest ( double *array ) { ... array = (double*) realloc ( array , new_number * sizeof(double) ) ; ... } The length of

Re: [R] from R to html

2007-04-24 Thread Jeffrey Horner
Henrique Dallazuanna wrote: Use the package R2HTML. Or xtable. Jeff -- http://biostat.mc.vanderbilt.edu/JeffreyHorner __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide

Re: [R] from R to html

2007-04-24 Thread Stefan Grosse
Is it so much effort to use the search on r-project.org? elyakhlifi mustapha wrote: hello, If I wanna export data.frame from R to html have you got some ideas to do this? ___ [[alternative HTML

[R] Datasets' data license ?

2007-04-24 Thread David Cournapeau
Hi, I would like to know if someone could clarify a question regarding license for redistribution of raw data in the datasets package. If possible, I would like to reuse those data in a package for scipy (http://www.scipy.org), which is under a BSD license. The package datasets itself is

[R] write

2007-04-24 Thread elyakhlifi mustapha
ok, I have problems with write function F Id_TrT1 Id_Geno Id_Rep Val_O 30 55094 185 90 55096 187 15 0 55098 192 21 0 55079 176 27 0 55095 192 33 0 55099 198 39 0 55092 1

Re: [R] Problem with length of array while calling C from R

2007-04-24 Thread Martin Maechler
Sven == Sven Knüppel [EMAIL PROTECTED] on Tue, 24 Apr 2007 13:53:09 +0200 writes: Sven Hello, Sven my problem is that I don't know how long must be an array of double while calling C from R. Sven R-Code: array - c(1,1,1) save - .C ( Ctest , a = array ) Sven

Re: [R] write

2007-04-24 Thread Conny Schmitt
Hallo, just try it like a data frame, as I mailed you last time. Here an example: dat - data.frame(Class=I(Id_TrT1), Levels=I(1), Values=I(2)) new.info - c(Class=Id_Geno, Levels=7 , Values=64208 64209 64210 64211 64212 64213 64214) dat - rbind(dat, new.info) dat new.info - c(Class=

[R] xyplot source file only work with echo=TRUE

2007-04-24 Thread Ronaldo Reis Junior
Hi, I write several xyplot graphics on a source file. When I try to use source(graphics.R) the source don't work, but if I use source(graphics.R,echo=T) it work. Generally some commands work without echo=T, but xyplot dont work. Why it dont work without echo=T? It is possible to write a

Re: [R] regarding 3d Bar Plot

2007-04-24 Thread rolf
[EMAIL PROTECTED] wrote: I have data in a two dimensional table. each row of the data adds upto 100 ( hence they are percentages ). it can be interpreted as like this A - I are the matches and P - X are the players. Thus Player P scored 20% of the runs during this season in Match C, 60% in

Re: [R] write

2007-04-24 Thread Conny Schmitt
Hallo, it might be a problem with the underscore in the names. Look up the syntax conventions. Here is a example for the write function in my programs perhaps it might help you: helpLetters= cat(\nThe workspace is now imported!, helpLetters ,\n\n) cat(The names of the variables are the same as

Re: [R] write

2007-04-24 Thread Petr PIKAL
Hi had you consider to look at help page? How do you expect your written file to be named? From help page write is a wrapper for cat, which gives further details on the format used cat is useful for producing output in user-defined functions. It converts its arguments to character strings,

Re: [R] regarding 3d Bar Plot --- correction.

2007-04-24 Thread rolf
I mis-spoke. It seems I had two collections of functions in the same directory. One by Colin Goodall, and one by David Scott (I have no record of where he is/was located). It is the *latter* collection that does all its work from within Fortran. I'll have another look at what Colin Goodall

Re: [R] xyplot source file only work with echo=TRUE

2007-04-24 Thread Sundar Dorai-Raj
Read FAQ 7.22 http://cran.r-project.org/doc/FAQ/R-FAQ.html#Why-do-lattice_002ftrellis-graphics-not-work_003f --sundar Ronaldo Reis Junior said the following on 4/24/2007 6:38 AM: Hi, I write several xyplot graphics on a source file. When I try to use source(graphics.R) the source don't

Re: [R] xyplot source file only work with echo=TRUE

2007-04-24 Thread Dieter Menne
Ronaldo Reis Junior chrysopa at gmail.com writes: I write several xyplot graphics on a source file. When I try to use source(graphics.R) the source don't work, but if I use source(graphics.R,echo=T) it work. Generally some commands work without echo=T, but xyplot dont work. Why it dont

Re: [R] LimmaGUI

2007-04-24 Thread J . delasHeras
Quoting [EMAIL PROTECTED]: Hi everyone, I have a question about limmaGUI.I've just started to use the program for microarray analysis.My problem is after loading data into Limma (with GAl file and RNA targets file),I'm not able to create an M box plot and everytime I'm trying to do that,

[R] Bug in xYplot() with method = 'filled bands'

2007-04-24 Thread Michael Kubovy
Dear r-helpers, I have been bitten by a cryptic comment in the help page for xYplot(). Here is some code from Madeline Bauer, one of the authors, which is essentailly the code on the help page for xYplot(): # This example uses the summarize function in Hmisc to # compute the median and outer

[R] Values greater than 1 or lower than -1 in ARMAacf

2007-04-24 Thread Cyril
Dear all, I need to compute the ACF (autocorrel) of an AR6 process, given the values of its parameters (w1,w2,w3,w4,w5,w6). First, I notice that there is an error as soon as the sum of the wi equals 1 : Error in drop(.Call(La_dgesv, a, as.matrix(b), tol, PACKAGE = base)) : system is

[R] Problem installing Rmpi with lam on SGI SLES9

2007-04-24 Thread Hendrik Fuß
Hi, I've been trying here to install Rmpi on an SGI IA-64 machine with 64 processors, running SuSE Linux Enterprise Server 9, R 2.4.0 and lam-mpi 7.1.3. While I've read of similar problems on this list, I think I've got an entirely new set of error messages to contribute (see below). I'm not sure

Re: [R] Values greater than 1 or lower than -1 in ARMAacf

2007-04-24 Thread Prof Brian Ripley
You do need to specify a stationary ARMA process for it to have an acf: your example is not valid since Mod(polyroot(c(1, -w))) [1] 0.6726057 1.6256859 1.6256859 1.7448484 1.7448484 18.4778223 Have you actually looked at the reference on the help page? It is there to be help-ful. Like

Re: [R] Problem installing Rmpi with lam on SGI SLES9

2007-04-24 Thread Prof Brian Ripley
On Tue, 24 Apr 2007, Hendrik Fuß wrote: Hi, I've been trying here to install Rmpi on an SGI IA-64 machine with 64 processors, running SuSE Linux Enterprise Server 9, R 2.4.0 and lam-mpi 7.1.3. While I've read of similar problems on this list, I think I've got an entirely new set of error

[R] Size of an object in workspace

2007-04-24 Thread Horace Tso
Hi folks, Is there a function to show the size of an R object? eg. in Kbytes? Couple months ago Bendix Carstensen posted this marvelous little function lls(), which shows all objects in the current workspace by mode, class and 'size'. This is a wonderful enhancement to the build-in ls()

[R] aovlmer.fnc, lmer and binomial response

2007-04-24 Thread Daniel E. Bunker
Dear R-users, I have recently discovered the languageR package and its aovlmer.fnc which offers a very slick way to test fixed effects hypotheses in lmer models using mcmc. However, the R help page for aovlmer.fnc states that the lmer object must be based a continuous response variable. I

Re: [R] Error in clusterApply(): recursive default argument reference

2007-04-24 Thread Martin Morgan
Hi Nicolas -- I think your code is assuming that all nodes have access to the same set of variables. One solution is to write in a more completely 'functional' style parNullDistribIntersection - function(g1, g2, perm=1000, cl=cl) { n1 = nodes(g1) parSapply(cl,

Re: [R] Size of an object in workspace

2007-04-24 Thread Horace Tso
Aaaah, wonderful. Thanks Ben. lls appears below. Should these functions be a permanent part of R? Just a thought. H. lls function (pos = 1, pat = ) { dimx - function(dd) if (is.null(dim(dd))) length(dd) else dim(dd) lll - ls(pos = pos, pat = pat) cat(formatC(mode, 1,

Re: [R] Size of an object in workspace

2007-04-24 Thread MORNEAU François
Hi, Is 'object.size()' the function your are looking for ? Best, François -Message d'origine- De : [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] De la part de Horace Tso Envoyé : mardi 24 avril 2007 17:59 À : r-help@stat.math.ethz.ch Objet : [R] Size of an object in workspace Hi folks,

Re: [R] Handling of arrays

2007-04-24 Thread Tony Plate
Try the following and look at what they return: str(ca) dimnames(ca) -- Tony Plate [EMAIL PROTECTED] wrote: Dear R-Experts, I just imported a workspace from Matlab. I know that I can get the names of the imported variables with names(). It works. The variable ca consists of several

[R] help interpreting the output of functions - any sources of information

2007-04-24 Thread Y G
Hi, I am looking for documentation, reference guides, etc. that explain the output of functions... For example using cor.test(, method=pearson) with Pearson's corr coeff the output is: Pearson's product-moment correlation data: a and b t = 0.2878, df = 14, p-value = 0. alternative

[R] specify xlim for each panel

2007-04-24 Thread Aimin Yan
I draw dotplot using the following code: sd.dotplot-dotplot(data.47.nmr$om_sd ~ as.factor(data.47.nmr$position) |as.factor(data.47.nmr$pr), data = data.47.nmr,layout=c(1,1), xlab=Position, xlim=range(data.47.nmr$position),ylab=Sd, main=Changes of omega angle in different positions, scales =

Re: [R] Size of an object in workspace

2007-04-24 Thread Henrik Bengtsson
See ll() in R.oo (that is two L:s), e.g. ll() member data.class dimension objectSize 1 author character 1120 2 myfunc function NULL512 3 x matrix c(3,11)248 4 y array c(5,7,1)264 ll() is quite flexible so you can create

[R] Matrix: how to re-use the symbolic Cholesky factorization?

2007-04-24 Thread Gardar Johannesson
I have been playing around with sparse matrices in the Matrix package, in particularly with the Cholesky factorization of matrices of class dsCMatrix. And BTW, what a fantastic package. My problem is that I have to carry out repeated Cholesky factorization of a spares symmetric matrices, say

[R] intersect more than two sets

2007-04-24 Thread Weiwei Shi
Hi, I searched the archives and did not find a good solution to that. assume I have 10 sets and I want to have the common character elements of them. how could i do that? -- Weiwei Shi, Ph.D Research Scientist GeneGO, Inc. Did you always know? No, I did not. But I believed... ---Matrix III

Re: [R] help interpreting the output of functions - any sources of information

2007-04-24 Thread Sarah Goslee
Hi, If you look at the documentation for the function you are interested in, in this case ?cor.test, it will generally give you an explanation of the return values (often brief, and not too helpful if you aren't already familiar with the test), but also one or more references that you can turn to

Re: [R] help interpreting the output of functions - any sources of information

2007-04-24 Thread Y G
On 24/04/07, Sarah Goslee [EMAIL PROTECTED] wrote: Hi, If you look at the documentation for the function you are interested in, in this case ?cor.test, it will generally give you an explanation of the return values (often brief, and not too helpful if you aren't already familiar with the

[R] R as a server on Linux

2007-04-24 Thread Markus Loecher
Hi, I am trying to avid the somewhat costly startup overhead of launching a separate R executable for each client request on Linux. My current architecture is such that My Java client explicitly calls R in batch mode and passes it certain parameters. The initital startup takes almost 10 seconds

[R] NA and NaN randomForest

2007-04-24 Thread clayton . springer
Dear R-help, This is about randomForest's handling of NA and NaNs in test set data. Currently, if the test set data contains an NA or NaN then predict.randomForest will skip that row in the output. I would like to change that behavior to outputting an NA. Can this be done with flags to

Re: [R] R as a server on Linux

2007-04-24 Thread Dirk Eddelbuettel
On Tue, Apr 24, 2007 at 02:15:43PM -0400, Markus Loecher wrote: Hi, I am trying to avid the somewhat costly startup overhead of launching a separate R executable for each client request on Linux. My current architecture is such that My Java client explicitly calls R in batch mode and passes

Re: [R] R as a server on Linux

2007-04-24 Thread Gregory Warnes
Hi Markus, Take a look at RSOAP (http://rsoap.sf.net). It was designed for handling concurrent client connections to R, and minimizes the per- connection startup time by pre-starting R and forking of processes as requests come in. Each client can maintain a stateful connection, if

Re: [R] intersect more than two sets

2007-04-24 Thread Weiwei Shi
assume t2 is a list of size 11 and each element is a vector of characters. the following codes can get what I wanted but I assume there might be a one-line code for that: t3 - t2[[1]] for ( i in 2:11){ t3 - intersect(t2[[i]], t3) } or there is no such apply? On 4/24/07, Weiwei Shi

Re: [R] R as a server on Linux

2007-04-24 Thread Martin Morgan
RWebServices http://wiki.fhcrc.org/caBioc/ offers a more structured approach to this -- map R functions and data classes to their Java representation, expose Java as a web service, service requests using persistent R workers. Martin Markus Loecher [EMAIL PROTECTED] writes: Hi, I am trying

Re: [R] intersect more than two sets

2007-04-24 Thread Charles C. Berry
On Tue, 24 Apr 2007, Weiwei Shi wrote: Hi, I searched the archives and did not find a good solution to that. assume I have 10 sets and I want to have the common character elements of them. how could i do that? list.of.sets - lapply(1:10,function(x) sample(letters,20)) # for example

Re: [R] intersect more than two sets

2007-04-24 Thread John Fox
Dear Weiwei Shi, How about using recursion? intersection - function(x, y, ...){ + if (missing(...)) intersect(x, y) + else intersect(x, intersection(y, ...)) + } a - letters[1:4] b - letters[2:5] c - letters[3:6] d - letters[4:7] e - letters[5:8] intersection(a, b) [1] b c d

Re: [R] intersect more than two sets

2007-04-24 Thread Tony Plate
I don't think there's that sort of apply-reduce function in R, but for this problem, the last line below happens to be a one-liner: set.seed(1) x - lapply(1:10, function(i) sample(letters, 20)) table(unlist(x)) a b c d e f g h i j k l m n o p q r s t u v w x y

Re: [R] specify xlim for each panel

2007-04-24 Thread Deepayan Sarkar
On 4/24/07, Aimin Yan [EMAIL PROTECTED] wrote: I draw dotplot using the following code: sd.dotplot-dotplot(data.47.nmr$om_sd ~ as.factor(data.47.nmr$position) |as.factor(data.47.nmr$pr), data = data.47.nmr,layout=c(1,1), xlab=Position, xlim=range(data.47.nmr$position),ylab=Sd, main=Changes

Re: [R] intersect more than two sets

2007-04-24 Thread hadley wickham
On 4/24/07, Weiwei Shi [EMAIL PROTECTED] wrote: assume t2 is a list of size 11 and each element is a vector of characters. the following codes can get what I wanted but I assume there might be a one-line code for that: t3 - t2[[1]] for ( i in 2:11){ t3 - intersect(t2[[i]], t3) }

Re: [R] intersect more than two sets

2007-04-24 Thread Weiwei Shi
I had a similar solution by using frequency but having more codes :( I also like the recursive idea : I initially tried to use rapply, however, which can only take one-arg function. thanks, everyone. -w On 4/24/07, hadley wickham [EMAIL PROTECTED] wrote: On 4/24/07, Tony Plate [EMAIL

Re: [R] intersect more than two sets

2007-04-24 Thread hadley wickham
On 4/24/07, Tony Plate [EMAIL PROTECTED] wrote: I don't think there's that sort of apply-reduce function in R, but for this problem, the last line below happens to be a one-liner: Only if you have character data though: x - lapply(1:10, function(i) sample(20, 15))

[R] Problem opening connections to removable hard drive

2007-04-24 Thread Elizabeth Purdom
Hi, I have my files and R session on a portable hard drive to be able to work across computers since I have some extremely large files. I have just started doing this and generally it works as I expect. But after a while of using my R session, certain types of calls to open connections on the

Re: [R] intersect more than two sets

2007-04-24 Thread Dimitris Rizopoulos
you could try something like the following: t2 - lapply(1:11, function(i) c(a, sample(letters[1:5], sample(10, 1), TRUE), b)) unq.vals - unique(unlist(t2)) ind - rowSums(sapply(t2, %in%, x = unq.vals)) == length(t2) unq.vals[ind] I hope it helps. Best, Dimitris Dimitris

Re: [R] intersect more than two sets

2007-04-24 Thread Peter Dalgaard
hadley wickham wrote: On 4/24/07, Weiwei Shi [EMAIL PROTECTED] wrote: assume t2 is a list of size 11 and each element is a vector of characters. the following codes can get what I wanted but I assume there might be a one-line code for that: t3 - t2[[1]] for ( i in 2:11){ t3 -

[R] How to write a function?

2007-04-24 Thread Keti Cuko
Hi, My name is Katie and I was wondering if you could help me with my problem. I am trying to write a function in R that computes the statistics (mean, standard error, confidence intervals) for stratified samples. I am not that familiar with R and I am having dificulties setting this function up.

Re: [R] Repeated Measures design using lme

2007-04-24 Thread Martin Henry H. Stevens
Have you seen Pinheiro and Bates (2000) that lays out the nlme package? It is very helpful. Hank On Apr 14, 2007, at 8:02 PM, Kyle. wrote: You probably can do this with lme function, but I don't know that for sure. aov (included in the stats package), with a call to the Error function how I

Re: [R] Matrix: how to re-use the symbolic Cholesky factorization?

2007-04-24 Thread Douglas Bates
On 4/24/07, Gardar Johannesson [EMAIL PROTECTED] wrote: I have been playing around with sparse matrices in the Matrix package, in particularly with the Cholesky factorization of matrices of class dsCMatrix. And BTW, what a fantastic package. My problem is that I have to carry out repeated

Re: [R] intersect more than two sets

2007-04-24 Thread Ron Michael
have u seen ?merge ? - Original Message From: Weiwei Shi [EMAIL PROTECTED] To: R Help R-help@stat.math.ethz.ch Sent: Tuesday, April 24, 2007 10:55:51 PM Subject: [R] intersect more than two sets Hi, I searched the archives and did not find a good solution to that. assume I have 10

[R] time series problem

2007-04-24 Thread Tomas Mikoviny
Hi everybody, I work with data with following pattern comm Date Value 1 4/10/2007 361.2 2 4/11/2007 370.1 3 4/12/2007 357.2 4 4/13/2007 362.3 5 4/16/2007 363.5 6 4/17/2007 368.7 7 4/18/2007

[R] understanding round() behavior

2007-04-24 Thread Robert Duval
Dear all, I am a little bit puzzled by the way round() works. Consider the following code a-123456.3678 round(a,digits=10) [1] 123456.4 I would expect the outcome to be something like 123456.3678 or 123456.368, instead the computer gives me 123456.4 no matter how large the digits are. Can

Re: [R] Size of an object in workspace

2007-04-24 Thread Weiwei Shi
library(gdata) ll() On 4/24/07, Horace Tso [EMAIL PROTECTED] wrote: Hi folks, Is there a function to show the size of an R object? eg. in Kbytes? Couple months ago Bendix Carstensen posted this marvelous little function lls(), which shows all objects in the current workspace by mode,

[R] Log-Returns

2007-04-24 Thread Soare Marcian-Alin
Hello, I have a Problem to make Log-Returns of the dataset EuStockMarkets. Is there any function which could calculate it for me? data(EuStockMarkets) Thanks! Alin Soare [[alternative HTML version deleted]] __ R-help@stat.math.ethz.ch

Re: [R] Log-Returns

2007-04-24 Thread Horace Tso
diff(log(x)) And this should be made into a function. H. Soare Marcian-Alin [EMAIL PROTECTED] 4/24/2007 2:17 PM Hello, I have a Problem to make Log-Returns of the dataset EuStockMarkets. Is there any function which could calculate it for me? data(EuStockMarkets) Thanks! Alin Soare

Re: [R] intersect more than two sets

2007-04-24 Thread John Fox
Dear Peter, Hadley, et al., Just to bring it back around, here's a recursive Fold(): a - letters[1:4] b - letters[2:5] c - letters[3:6] d - letters[4:7] e - letters[5:8] Fold - function(f, x, y, ...){ + if (missing(...)) f(x, y) + else f(x, Fold(f, y, ...)) + } Fold(intersect,

Re: [R] understanding round() behavior

2007-04-24 Thread jim holtman
'print' by default only prints 7 digits. See below: round(a, digits=10) [1] 123456.4 print(round(a, digits=10), digits=10) [1] 123456.3678 On 4/24/07, Robert Duval [EMAIL PROTECTED] wrote: Dear all, I am a little bit puzzled by the way round() works. Consider the following code

Re: [R] time series problem

2007-04-24 Thread Achim Zeileis
On Tue, 24 Apr 2007, Tomas Mikoviny wrote: Hi everybody, I work with data with following pattern comm Date Value 1 4/10/2007 361.2 2 4/11/2007 370.1 3 4/12/2007 357.2 4 4/13/2007 362.3 5 4/16/2007 363.5 6

Re: [R] Log-Returns

2007-04-24 Thread AA
see ?getReturns in fMultivar package (part of Rmetrics). the function has an option between continuous(log returns) or discrete calculation. I used it with timeSeries objects. works well. good luck. A. - Original Message - From: Soare Marcian-Alin [EMAIL PROTECTED] To:

[R] R Anova

2007-04-24 Thread Keizer_61
I am really struggling with this question. Three students take part of an experiment. student smoking non-smokingcancer 110.5 7.5 6.5 2 9.5 6.5 8.4 3 8.5 7.2 5.5 the proper

Re: [R] How to write a function?

2007-04-24 Thread Robert Duval
Hi Keti Before reinventing the wheel from scratch you might want to take a look at the survey package http://faculty.washington.edu/tlumley/survey/ best robert On 4/24/07, Keti Cuko [EMAIL PROTECTED] wrote: Hi, My name is Katie and I was wondering if you could help me with my problem. I am

[R] simulate values

2007-04-24 Thread Soare Marcian-Alin
Hello, I want to simulate 100 values of the ARMA Process with this function: x[i] = 0.5 * x[i-1] + 0.2 * x[i-2] + x[i] + 0.9 * x[i-1] + 0.2 * x[i-2] + 0.3 * x[i-3] which possibilities do I have? Alin Soare [[alternative HTML version deleted]]

[R] Analysis of Variance

2007-04-24 Thread CrazyJoe
Hello Blind toy_Car toy_truck toy_boat 1 6.3 7.5 5.4 2 3.4 8.1 6.1 3 2.2 4.4 5.1 How do we calculate the F-statistic in R. Any help is really appreciated. -- View this message in context:

[R] exclude the unfit data from the iteration

2007-04-24 Thread Mohammad Ehsanul Karim
Dear List, Trying to explain my situation as simply as possible for me: I am running a series of iteration on coxph model on simulated data (newly generated data on each iteration to run under coxph; in my example below- sim.fr is the generated data). However, sometimes i get warning messages

[R] negative number to positive number

2007-04-24 Thread H. Paul Benton
Hello all, I know this is a pretty easy question but I can't find it in S poetry or R help. How can I make a negative number positive. Such as -5 to be +5 I tried +(-5), but that didn't work. So no, I don't mean taking a -5^2 just to get a positive number. This is in a function so it's not just

Re: [R] negative number to positive number

2007-04-24 Thread Rajarshi Guha
On Tue, 2007-04-24 at 16:46 -0700, H. Paul Benton wrote: Hello all, I know this is a pretty easy question but I can't find it in S poetry or R help. How can I make a negative number positive. Such as -5 to be +5 I tried +(-5), but that didn't work. So no, I don't mean taking a -5^2

Re: [R] exclude the unfit data from the iteration

2007-04-24 Thread Bert Gunter
?try Wrap each iteration in a try() call Also ?tryCatch if you want to get fancy -- and can understand the rather arcane docs. Bert Gunter Genentech Nonclinical Statistics -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Mohammad Ehsanul Karim Sent:

Re: [R] negative number to positive number

2007-04-24 Thread H. Paul Benton
Thanks Research Technician Mass Spectrometry o The / o Scripps \ o Research / o Institute Rajarshi Guha wrote: On Tue, 2007-04-24 at 16:46 -0700, H. Paul Benton wrote: Hello all, I know this is a pretty easy question but I can't find it in S poetry or R help. How can I

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