Re: [R-pkg-devel] [External] [External] RcmdrPlugin.HH_1.1-48.tar.gz

2024-03-07 Thread Martin Maechler
> Duncan Murdoch > on Thu, 7 Mar 2024 05:08:40 -0500 writes: > On 07/03/2024 4:16 a.m., Ivan Krylov wrote: >> On Wed, 6 Mar 2024 13:46:55 -0500 Duncan Murdoch >> wrote: >> >>> is this just a more or less harmless error, thinking >>> that the dot needs

Re: [R-pkg-devel] [EXTERN] Re: [EXTERN] Re: @doctype is deprecated. need help for r package documentation

2024-03-07 Thread Ivan Krylov via R-package-devel
В Thu, 7 Mar 2024 20:27:29 + "Ruff, Sergej" пишет: > I am refering to Rstudio. I checked the settings and type is set to > "htlm", not text. And I was wondering why the package documentation > opened in a browser when I used @doctype. Do you still have the source package .tar.gz file for

Re: [R-pkg-devel] [EXTERN] Re: [EXTERN] Re: @doctype is deprecated. need help for r package documentation

2024-03-07 Thread Ruff, Sergej
yes, I am refering to Rstudio. I checked the settings and type is set to "htlm", not text. And I was wondering why the package documentation opened in a browser when I used @doctype. Maybe it has nothing to do with that but I can´t find the reason why it opened in the browser in the first

Re: [R-pkg-devel] [EXTERN] Re: @doctype is deprecated. need help for r package documentation

2024-03-07 Thread Jeff Newmiller via R-package-devel
What is a "right side window"? Are you mixing up what R does and what RStudio does? I think I agree with Ivan that this is a question about the environment in which you are loading the package rather than anything in the package itself. On March 7, 2024 11:21:06 AM PST, "Ruff, Sergej" wrote:

Re: [R-pkg-devel] [EXTERN] Re: @doctype is deprecated. need help for r package documentation

2024-03-07 Thread Ruff, Sergej
So, in the previous version of the package when we type ?bootGSEA, it opens the documentation in webpage (google, firefox…) and when we type ?pkg-function opens to the right side window, but now it just opens in the right side window. I was wondering why does it not open in webpage now.

Re: [R-pkg-devel] [EXTERN] Re: @doctype is deprecated. need help for r package documentation

2024-03-07 Thread Ruff, Sergej
the package is currently available under: https://github.com/klausjung-hannover/bootGSEA/blob/main/R/bootGSEA.r line 1-31 contains the package information. #' Package contains functions that repeates GSEA using bootstrap samples of gene sets. Bootstrap results are #' aggregated to a new

Re: [R-pkg-devel] @doctype is deprecated. need help for r package documentation

2024-03-07 Thread Hadley Wickham
Do you have a pointer to the roxygen2 comments that you're using? Hadley On Thu, Mar 7, 2024 at 5:38 AM Ruff, Sergej wrote: > Hello, > > I need help with a package I am currently developing called bootGSEA. > I noticed that when I try ‘?bootGSEA’ it goes to the help page in R > itself but not

Re: [R-pkg-devel] RFC: C backtraces for R CMD check via just-in-time debugging

2024-03-07 Thread Vladimir Dergachev
Hi Ivan, Here is the piece of code I currently use: void backtrace_dump(void) { unw_cursor_tcursor; unw_context_t context; unw_getcontext(); unw_init_local(, ); while (unw_step() > 0) { unw_word_t offset, pc; charfname[64];

Re: [R-pkg-devel] [External] [External] RcmdrPlugin.HH_1.1-48.tar.gz

2024-03-07 Thread Serguei Sokol
Le 07/03/2024 à 11:08, Duncan Murdoch a écrit : On 07/03/2024 4:16 a.m., Ivan Krylov wrote: On Wed, 6 Mar 2024 13:46:55 -0500 Duncan Murdoch wrote: is this just a more or less harmless error, thinking that the dot needs escaping I think it's this one. You are absolutely right that the dot

Re: [R-pkg-devel] @doctype is deprecated. need help for r package documentation

2024-03-07 Thread Ivan Krylov via R-package-devel
В Thu, 7 Mar 2024 10:37:51 + "Ruff, Sergej" пишет: > I noticed that when I try _?bootGSEA_ it goes to the help page in R > itself but not to the html page That's up to the user to choose. help(bootGSEA, help_type = 'html') should get you to the HTML documentation; help(bootGSEA, help_type =

[R-pkg-devel] @doctype is deprecated. need help for r package documentation

2024-03-07 Thread Ruff, Sergej
Hello, I need help with a package I am currently developing called bootGSEA. I noticed that when I try �?bootGSEA� it goes to the help page in R itself but not to the html page (we had this issue last time as well but we solved it by adding a documentation to the package itself to the R file)

Re: [R-pkg-devel] [External] [External] RcmdrPlugin.HH_1.1-48.tar.gz

2024-03-07 Thread Duncan Murdoch
On 07/03/2024 4:16 a.m., Ivan Krylov wrote: On Wed, 6 Mar 2024 13:46:55 -0500 Duncan Murdoch wrote: is this just a more or less harmless error, thinking that the dot needs escaping I think it's this one. You are absolutely right that the dot doesn't need escaping in either TRE (which is

Re: [R-pkg-devel] RFC: C backtraces for R CMD check via just-in-time debugging

2024-03-07 Thread Ivan Krylov via R-package-devel
On Tue, 5 Mar 2024 18:26:28 -0500 (EST) Vladimir Dergachev wrote: > I use libunwind in my programs, works quite well, and simple to use. > > Happy to share the code if there is interest.. Do you mean that you use libunwind in signal handlers? An example on how to produce a backtrace without

Re: [R-pkg-devel] [External] [External] RcmdrPlugin.HH_1.1-48.tar.gz

2024-03-07 Thread Ivan Krylov via R-package-devel
On Wed, 6 Mar 2024 13:46:55 -0500 Duncan Murdoch wrote: > is this just a more or less harmless error, thinking that > the dot needs escaping I think it's this one. You are absolutely right that the dot doesn't need escaping in either TRE (which is what's used inside exportPattern) or PCRE. In