Re: [R-pkg-devel] is Fortran write still strictly forbidden?

2024-05-08 Thread Erin Hodgess
Hi Jisca: I have used the write successfully. I’m not sure if this matters or not, but I am using WSL 2 with Ubuntu 22.04 installed. It works fine with R => 4.0. Hope this helps. Sincerely, Erin Erin Hodgess, PhD mailto: erinm.hodg...@gmail.com On Wed, May 8, 2024 at 6:49 PM Jisca Huis

Re: [R-pkg-devel] OpenCL R packages on CRAN

2023-03-13 Thread Erin Hodgess
corresponding graphics hardware is not available on the > build/check machines, but if possible you shopudl support that users > with the required hardware can compile the package from sources on > Windows, too. > > Best, > Uwe Ligges > > ___

Re: [R-pkg-devel] multithreading in packages

2021-10-09 Thread Erin Hodgess
Yes it does use MPI. You can get the pbd from GitHub, as a backup. Thanks On Sat, Oct 9, 2021 at 2:23 PM Vladimir Dergachev wrote: > > > On Sat, 9 Oct 2021, Erin Hodgess wrote: > > > Have you thought about using C or c++, please? > > Yes, indeed, the core of the packa

Re: [R-pkg-devel] multithreading in packages

2021-10-09 Thread Erin Hodgess
riable. > > Oh, this would never be run through CRAN tests, it is meant for data that > is too big for CRAN. > > I seem to remember that the Intel compiler used a different environmental > variable, but it could be this was fixed since the last time I used it. > > best > > Vladimir Dergachev

Re: [R-pkg-devel] Fortran with OpenMP on MACOS

2020-10-13 Thread Erin Hodgess
P - Brasil - 05508-090 > <http://github.com/ibarraespinosa> > <https://zoom.us/j/6527509021?pwd=VmlXQWliR1JSZGtpS0tJR1A2dUZpZz09> > > [[alternative HTML version deleted]] > > __ > R-package-devel@r-project.org mailing list > https://stat.ethz.ch/

Re: [R-pkg-devel] Errors in make check in Windows 10 with OpenBLAS

2020-03-21 Thread Erin Hodgess
Finally figured it out...I was having "path problems"! I'm all set here. Thanks so much for your help Sincerely, Erin Erin Hodgess, PhD mailto: erinm.hodg...@gmail.com On Sat, Mar 21, 2020 at 10:29 AM Tomas Kalibera wrote: > Maybe the created Riconv.dll is copied over b

Re: [R-pkg-devel] Errors in make check in Windows 10 with OpenBLAS

2020-03-21 Thread Erin Hodgess
Thanks! I searched the output for Riconv but no luck yet. On Sat, Mar 21, 2020 at 10:29 AM Tomas Kalibera wrote: > Maybe the created Riconv.dll is copied over by libiconv at some point > during your custom build. > > Tomas > > On 3/21/20 3:58 PM, Erin Hodgess wrote: >

Re: [R-pkg-devel] Errors in make check in Windows 10 with OpenBLAS

2020-03-21 Thread Erin Hodgess
-std=gnu99 -shared -o Riconv.dll Riconv.def win_iconv.o Just the -march=native -pipe Erin Hodgess, PhD mailto: erinm.hodg...@gmail.com On Fri, Mar 20, 2020 at 9:01 AM Tomas Kalibera wrote: > Thanks, so the problem is that your custom build uses GNU libiconv, which > does not suppor

Re: [R-pkg-devel] Errors in make check in Windows 10 with OpenBLAS

2020-03-20 Thread Erin Hodgess
ted as people > normally use it. Still, the problem is not specific to strtrim, just to the > example. > > Best > > Tomas > > > On 3/20/20 3:27 PM, Erin Hodgess wrote: > > Here are the results. > > Looks like enc2native and the iconv settings are different. >

Re: [R-pkg-devel] Errors in make check in Windows 10 with OpenBLAS

2020-03-20 Thread Erin Hodgess
And the example runs just fine on the regular build. Thanks Erin Hodgess, PhD mailto: erinm.hodg...@gmail.com On Fri, Mar 20, 2020 at 8:03 AM Tomas Kalibera wrote: > Hi Erin, > > when you are building from sources, you can always uncomment the example > in str.Rd. But it would b

Re: [R-pkg-devel] Errors in make check in Windows 10 with OpenBLAS

2020-03-20 Thread Erin Hodgess
uot;A" > enc2native("\u4e2d") [1] "" > Sys.setlocale("LC_CTYPE", "English_United States.28605") [1] "English_United States.28605" > enc2native("\uff21") [1] "A" > enc2native("\u4e2d") [1] "" >

Re: [R-pkg-devel] Errors in make check in Windows 10 with OpenBLAS

2020-03-20 Thread Erin Hodgess
t;) > enc2native("\u4e2d") > Sys.setlocale("LC_CTYPE", "English_United States.28605") > enc2native("\uff21") > enc2native("\u4e2d") > extSoftVersion()[c("iconv","BLAS")] > Thanks, > Tomas > > On 3/20/20 2:35 P

Re: [R-pkg-devel] Errors in make check in Windows 10 with OpenBLAS

2020-03-20 Thread Erin Hodgess
I was wondering if there is a way to either skip the utilities check and continuing, in order to test the other packages, please. Thanks! On Fri, Mar 20, 2020 at 5:01 AM Martin Maechler wrote: > >>>>> Erin Hodgesson Thu, 19 Mar 2020 22:44:39 -0600 writes: > >

Re: [R-pkg-devel] Errors in make check in Windows 10 with OpenBLAS

2020-03-19 Thread Erin Hodgess
c) == c(64,64, 32, 64)) > ## nchar.max: 1st line needs an increase of 2 in order to see 1 (in UTF-$ > invisible(lapply(60:66, function(N) str(fwch, nchar.max = N))) Error in strtrim(x.lrg, nchar.max - nc) : unsupported conversion from 'UTF-8' in codepage 28605 > invisible

[R-pkg-devel] Errors in make check in Windows 10 with OpenBLAS

2020-03-19 Thread Erin Hodgess
66, function(N) str(fwch, nchar.max = N))) Error in strtrim(x.lrg, nchar.max - nc) : unsupported conversion from 'UTF-8' in codepage 28605 Calls: lapply ... FUN -> str -> str.default -> maybe_truncate -> strtrim Execution halted Has anyone run into this before, pl

Re: [R-pkg-devel] Using FORTRAN libraries and compiler options

2019-11-11 Thread Erin Hodgess
t > https://stat.ethz.ch/mailman/listinfo/r-package-devel > -- Erin Hodgess, PhD mailto: erinm.hodg...@gmail.com [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel

Re: [R-pkg-devel] Trying to compile R-3.5.1 with openblas for windows

2018-09-15 Thread Erin Hodgess
Finally got Openblas installed! The speed up is amazing! Thanks for your help and patience. Sincerely, Erin Erin Hodgess, PhD mailto: erinm.hodg...@gmail.com On Fri, Sep 14, 2018 at 2:46 PM Avraham Adler wrote: > No, I’m sorry, I haven’t seen that and I built R 3.5.1 with OpenB

Re: [R-pkg-devel] Trying to compile R-3.5.1 with openblas for windows

2018-09-14 Thread Erin Hodgess
I have a snag on regular BLAS as well. I feel better about the Open BLAS On Fri, Sep 14, 2018 at 2:47 PM Erin Hodgess wrote: > That is my next thing to try. Thanks for your help! > > > Erin Hodgess, PhD > mailto: erinm.hodg...@gmail.com > > > On Fri, Sep 14, 2018

Re: [R-pkg-devel] Trying to compile R-3.5.1 with openblas for windows

2018-09-14 Thread Erin Hodgess
That is my next thing to try. Thanks for your help! Erin Hodgess, PhD mailto: erinm.hodg...@gmail.com On Fri, Sep 14, 2018 at 2:46 PM Avraham Adler wrote: > No, I’m sorry, I haven’t seen that and I built R 3.5.1 with OpenBLAS > recently. Does it work if you use the vanilla BLAS? &

Re: [R-pkg-devel] Trying to compile R-3.5.1 with openblas for windows

2018-09-14 Thread Erin Hodgess
erence to `cholmod_free_sparse' Csparse.o:Csparse.c:(.text+0xdf9): undefined reference to `cholmod_copy' Does this look familiar, please? Thanks, Erin Erin Hodgess, PhD mailto: erinm.hodg...@gmail.com On Fri, Sep 14, 2018 at 1:13 PM Avraham Adler wrote: > Try following the direc

[R-pkg-devel] Trying to compile R-3.5.1 with openblas for windows

2018-09-14 Thread Erin Hodgess
e with the Matrix package build. The components of the Cholesky all appear as unreferenced. Has anyone else run into this, please? I'm working with R-3.5.1 source. Thanks, Erin Erin Hodgess, PhD mailto: erinm.hodg...@gmail.com [[al

Re: [R-pkg-devel] Making adjustments to the R CMD check/install commands

2018-08-27 Thread Erin Hodgess
Yay! I got it to work! I used the ~/.R/Makevars, and all is well. Thanks again, Erin Erin Hodgess, PhD mailto: erinm.hodg...@gmail.com On Mon, Aug 27, 2018 at 2:29 PM Kevin Ushey wrote: > Hi Erin, > > The R extensions manual should be helpful here -- in particular, see the >

Re: [R-pkg-devel] Making adjustments to the R CMD check/install commands

2018-08-27 Thread Erin Hodgess
INSTALL^M So I'm still puzzled. Any help much appreciated. Sincerely, Erin Erin Hodgess, PhD mailto: erinm.hodg...@gmail.com On Mon, Aug 27, 2018 at 2:29 PM Kevin Ushey wrote: > Hi Erin, > > The R extensions manual should be helpful here -- in particular, see the > se

[R-pkg-devel] Making adjustments to the R CMD check/install commands

2018-08-27 Thread Erin Hodgess
ed. Is there a way that I can direct the check function to just use the make/Makefile, please? Or am I out of luck, please? (highly probable) Thanks, Erin Erin Hodgess, PhD mailto: erinm.hodg...@gmail.com [[alternative HTML version deleted]] _

[R-pkg-devel] compiling a Windows package with the PGI compiler

2018-08-26 Thread Erin Hodgess
Hello! I am building a new package with source code that requires the Portland group compiler. How would I go about building the package with this compiler rather than gfortran, please? Thank you in advance. Sincerely, Erin PS. Windows 10, and R-3.5.1. Erin Hodgess, PhD mailto: erinm.hodg

Re: [R-pkg-devel] trouble with R check

2018-05-31 Thread Erin Hodgess
Hi Duncan That was exactly it. Thank you very much Erin On Thu, May 31, 2018 at 7:50 AM, Duncan Murdoch wrote: > On 31/05/2018 8:35 AM, Erin Hodgess wrote: > >> Hello! >> >> >> I'm working with R-3.4.3 and when I run R CMD check >> rmpiFort_0

[R-pkg-devel] trouble with R check

2018-05-31 Thread Erin Hodgess
zy loading failed for package ‘rmpiFort’ * removing ‘/home/hodgess/R-3.4.3/bin/rmpiFort.Rcheck/rmpiFort’ This is done on the Bridges Supercomputer at the Pittsburgh Supercomputing Center. Thanks, Erin PS. OS is Centos 6. -- Erin Hodgess Associate Professor Department of Mathematical and

[R-pkg-devel] Compiling with more than one compiler in package development

2018-01-05 Thread Erin Hodgess
ot;, as.single(y), as.integer(n)) : "tria" not resolved from current namespace (rmpigFortr) > But if I type in the call to .Fortran myself, it works. Any idea what I might be doing wrong, please? Thanks in advance, Sincerely, Erin -- Erin Hodgess Associate Professor Depart