Hello all,
I am doing a CAP (or dbRDA) in vegan, using the function capscale, where
the response is a dissimilarity matrix (Sorensen's distance index) and the
explanatory matrix consists of 19 variables. The code runs apparently fine,
but the species scores appear as NA (site scores are properly
On 07/11/2013, at 12:05 PM, Duarte Viana wrote:
Hello all,
I am doing a CAP (or dbRDA) in vegan, using the function capscale, where
the response is a dissimilarity matrix (Sorensen's distance index) and the
explanatory matrix consists of 19 variables. The code runs apparently fine,
but
Hi Jari,
No, I completely missed that argument. It now provides the species scores.
Thanks a lot, Jari.
Cheers,
Duarte
On Thu, Nov 7, 2013 at 11:11 AM, Jari Oksanen jari.oksa...@oulu.fi wrote:
On 07/11/2013, at 12:05 PM, Duarte Viana wrote:
Hello all,
I am doing a CAP (or dbRDA)
Dear list,
I am running a script on my computer to estimate kernelUDs for several
individuals and several years (from GPS relocations). I am using the
getverticeshr() function to extract home range contours, and for some
reasons I end up having this error message:
Erreur dans re[[i]] : indice
Perhaps you could show us your code. Are you using a loop?
Cheers,
Roman
On Thu, Nov 7, 2013 at 4:23 PM, Dylann Kersusan
kersusan.dyl...@gmail.comwrote:
Dear list,
I am running a script on my computer to estimate kernelUDs for several
individuals and several years (from GPS relocations).
Hi Dylann,
All we can possibly tell you is that the index is out of range.
That's the kind of problem that really needs a reproducible example
for anyone to be able to give you useful advice.
Here's some advice on doing so:
Dear list,
I am running a script on my computer to estimate kernelUDs for several
individuals and several years (from GPS relocations). I am using the
getverticeshr() function to extract home range contours, and for some
reasons I end up having this error message:
Erreur dans re[[i]] : indice
Sorry for the first thread, it was incomplete! There you have a sample of
my dataset and coding.
Cheers,
2013/11/7 Dylann Kersusan kersusan.dyl...@gmail.com
Dear list,
I am running a script on my computer to estimate kernelUDs for several
individuals and several years (from GPS
Put a browser() call as the first line inside the if() {} statement and run
the chunk of code. Program will pause at the line of browser() and then you
can step through the code to see the offending line. Another way would be
to see the trace stack of traceback(), a function you run after you get
And here comes the entire script.
Hope it will help.
#hr_data$date - paste(hr_data$day, hr_data$month, hr_data$year, sep=-)
hr_data$Date_time2 - paste(hr_data$UTC_DATE, hr_data$UTC_TIME, sep= )
hr_data$Date_time2 - as.POSIXct(strptime((hr_data$Date_time2), %d/%m/%Y
%H:%M:%S), tz=GMT)
Hi Dylann,
On 11/07/2013 04:30 PM, Sarah Goslee wrote:
Hi Dylann,
All we can possibly tell you is that the index is out of range.
That's the kind of problem that really needs a reproducible example
for anyone to be able to give you useful advice.
Here's some advice on doing so:
I have data frames on which I want to calculate the default Bray-Curtis
dissimilarity matrix using vegdist() in the vegan package. The data are
proportions of individuals in each of 5 categories with the first column as
the collection date. One such data frame is:
sampdate filter gather
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