Dear Klaus,
Thanks for pointing this out, that's exactly what I was looking for!
I have a question concerning the bootstrapping method and wheater it
makes sense to add the block bootstrap to better model adjacent that are
autocorrelated (presumably breaking the iid assumption).
But since it's o
Hi Sebastian,
All the likelihood-based phylogenetic inference functions have been
removed from ape since version 2.4 (released in Oct 2009) because of the
(incomparably better) implementation in phangorn:
library(phangorn)
?SH.test
Best,
Emmanuel
Le 08/06/2018 à 14:50, Sebastian Y. Müller
Hi Sebastian,
there is an implementation of the SH-test and SOWH-test in phangorn. Send
me an mail off list if you have problems using them.
Regards,
Klaus
On Jun 8, 2018 8:50 AM, "Sebastian Y. Müller" wrote:
Dear all,
I'd was wondering how to best perform a test to determine test
disagreement
Dear all,
I'd was wondering how to best perform a test to determine test
disagreement (congruence test) in R?
Additional information can be found in Planet et al (DOI:
10.1016/j.jbi.2005.08.008).
A common test seems the Shimodaira-Hasegawa Test (SH-test) which used to
be implemented in APE:
