Dear all,
I'd was wondering how to best perform a test to determine test
disagreement (congruence test) in R?
Additional information can be found in Planet et al (DOI:
10.1016/j.jbi.2005.08.008).
A common test seems the Shimodaira-Hasegawa Test (SH-test) which used to
be implemented in APE:
https://www.rdocumentation.org/packages/ape/versions/2.3-3/topics/sh.test
However, it seem to have disappeared in recent versions (e.g. ape 5.0).
Did this happen for a reason? Or maybe it has been replaced by a more
appropriate test?
Failing this, is anyone aware of other software to perform SH-, KH- or
SOWH-tests?
Thanks for any help!
--
Dr. Sebastian Müller
Department of Plant Sciences
University of Cambridge
Downing Street, Cambridge, CB2 3EA, UK
http://www.plantsci.cam.ac.uk/directory/mueller-sebastian
Phone: 0044 1223 748976
_______________________________________________
R-sig-phylo mailing list - R-sig-phylo@r-project.org
https://stat.ethz.ch/mailman/listinfo/r-sig-phylo
Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
