Re: [Rdkit-discuss] how to output multiple Kekule structures

2017-09-12 Thread Paolo Tosco
ful. I will need to digest the detailed >>> information >>> you have provided. I am somewhat familiar with recursive SMARTS. Thanks >>> again. >>> >>> Regards, >>> Jim Metz >>> >>> >>> >>> >>&g

Re: [Rdkit-discuss] how to output multiple Kekule structures

2017-09-11 Thread Jason Biggs
tm...@aol.com> <jamestm...@aol.com> > Cc: RDKit Discuss <rdkit-discuss@lists.sourceforge.net> > <rdkit-discuss@lists.sourceforge.net> > Sent: Mon, Sep 11, 2017 11:15 am > Subject: Re: [Rdkit-discuss] how to output multiple Kekule structures > > > On Mon,

Re: [Rdkit-discuss] how to output multiple Kekule structures

2017-09-11 Thread James T. Metz via Rdkit-discuss
uss <rdkit-discuss@lists.sourceforge.net> Sent: Mon, Sep 11, 2017 2:53 pm Subject: Re: [Rdkit-discuss] how to output multiple Kekule structures Hi Jim, you can indeed enumerate all Kekulè structures for a molecule withinthe RDKit using C

Re: [Rdkit-discuss] how to output multiple Kekule structures

2017-09-11 Thread Paolo Tosco
: Greg Landrum <greg.land...@gmail.com <mailto:greg.land...@gmail.com>> To: James T. Metz <jamestm...@aol.com <mailto:jamestm...@aol.com>> Cc: RDKit Discuss <rdkit-discuss@lists.sourceforge.net <mailto:rdkit-discuss@lists.sourceforge.net>> Sent: Mon,

Re: [Rdkit-discuss] how to output multiple Kekule structures

2017-09-11 Thread James T. Metz via Rdkit-discuss
. Metz <jamestm...@aol.com> Cc: RDKit Discuss <rdkit-discuss@lists.sourceforge.net> Sent: Mon, Sep 11, 2017 11:15 am Subject: Re: [Rdkit-discuss] how to output multiple Kekule structures On Mon, Sep 11, 2017 at 5:55 PM, James T. Metz <jamestm...@aol.com> wrote: Greg, I need

Re: [Rdkit-discuss] how to output multiple Kekule structures

2017-09-11 Thread Greg Landrum
gt; > To: James T. Metz <jamestm...@aol.com> > Cc: RDKit Discuss <rdkit-discuss@lists.sourceforge.net> > Sent: Mon, Sep 11, 2017 10:31 am > Subject: Re: [Rdkit-discuss] how to output multiple Kekule structures > > Hi Jim, > > The code currently has no way to enume

Re: [Rdkit-discuss] how to output multiple Kekule structures

2017-09-11 Thread James T. Metz via Rdkit-discuss
Rdkit-discuss] how to output multiple Kekule structures Hi Jim, The code currently has no way to enumerate Kekule structures. I don't recall this coming up in the past and, to be honest, it doesn't seem all that generally useful. Perhaps there's an alternate way to solve the problem; what are

Re: [Rdkit-discuss] how to output multiple Kekule structures

2017-09-11 Thread Greg Landrum
Hi Jim, The code currently has no way to enumerate Kekule structures. I don't recall this coming up in the past and, to be honest, it doesn't seem all that generally useful. Perhaps there's an alternate way to solve the problem; what are you trying to do? -greg On Mon, Sep 11, 2017 at 5:04

[Rdkit-discuss] how to output multiple Kekule structures

2017-09-11 Thread James T. Metz via Rdkit-discuss
Hello, Suppose I read in an aromatic SMILES e.g., for benzene c1c1 I would like to generate the major canonical resonance forms and save the results as two separate molecules. Essentially I am trying to generate m1 = 'C1=CC=CC-C1' m2 = 'C1C=CC=CC1' Can