[Rdkit-discuss] install rdkit cartridge

2015-04-24 Thread Tim Dudgeon
How to install RDKit cartridge? The instructions here show how to use it, but not how to install it. http://www.rdkit.org/docs/Cartridge.html I have RDKit and PostgreSQL installed from the corresponding Debian packages, but alas no cartridge :-( Tim

Re: [Rdkit-discuss] install rdkit cartridge

2015-04-24 Thread Axel Pahl
Dear Tim, please take a look at this README in your installation: your RDKit folder/Code/PgSQL/rdkit/README It essentially boils down to this: cd $RDBASE/Code/PgSQL/rdkit $ make $ sudo make install $ make installcheck (only the second step has to be performed as root) Kind regards, Axel On

Re: [Rdkit-discuss] install rdkit cartridge

2015-04-24 Thread Christos Kannas
Hi Tim, I'm not sure about this, but I think that in order to use the cartridge you have to build RDKit and cartridge from source. Regards, Christos Kannas Sent from my Galaxy Note 4. On 24 Apr 2015 13:47, Tim Dudgeon tdudgeon...@gmail.com wrote: Is it possible when using the packages? I'm

Re: [Rdkit-discuss] install rdkit cartridge

2015-04-24 Thread Tim Dudgeon
Is it possible when using the packages? I'm trying to get a reproducible build process so prefer not to have to build from sources. Tim On 24/04/2015 13:29, Axel Pahl wrote: The instructions below appliy to the RDKit installation from source and are probably not applicable to the Debian

Re: [Rdkit-discuss] install rdkit cartridge

2015-04-24 Thread Axel Pahl
The instructions below appliy to the RDKit installation from source and are probably not applicable to the Debian package, sorry for generating confusion. Kind regards, Axel On 04/24/2015 02:24 PM, Axel Pahl wrote: Dear Tim, please take a look at this README in your installation: your

Re: [Rdkit-discuss] install rdkit cartridge

2015-04-24 Thread Greg Landrum
Hi Tim, I don't think the cartridge is made available as part of the debian packaging. Gianluca includes it as part of his fedora packages ( https://copr.fedoraproject.org/coprs/giallu/rdkit/) but I believe that it's not there for debian. You might try asking on the debichem list (

Re: [Rdkit-discuss] Java and sdf.gz files

2015-04-24 Thread Greg Landrum
Matthew, On Fri, Apr 24, 2015 at 11:43 PM, Matthew Lardy mla...@gmail.com wrote: I am trying to open and write compressed sd files with the Java wrappers. I know, and have, been able to do this in Python but has anyone cracked how to read and write sdf.gz files in Java? After googling

[Rdkit-discuss] Java and sdf.gz files

2015-04-24 Thread Matthew Lardy
Hi all, I am trying to open and write compressed sd files with the Java wrappers. I know, and have, been able to do this in Python but has anyone cracked how to read and write sdf.gz files in Java? Thanks in advance! Matthew