Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/15421
@falaki @wangmiao1981 Can we summarize the discussion around the
`NegativeArraySizeException` ?
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/15471
@falaki Thats an interesting approach to try -- the other thing to try
might be to use a separate connection to send back results. i.e. as soon as JVM
gets the request it returns `OK` or some
Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/15446
I updated the JIRA. @jrshust could you close this PR ? We don't have
permission to close PRs and only PR authors can do it
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/15446
@felixcheung Resolving the JIRA and assigning it to @jrshust sounds good to
me.
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/15446
Jenkins, test this please
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Github user shivaram commented on a diff in the pull request:
https://github.com/apache/spark/pull/15433#discussion_r83043023
--- Diff: core/src/main/scala/org/apache/spark/api/r/RBackendHandler.scala
---
@@ -263,18 +264,19 @@ private[r] object JVMObjectTracker
Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/15446
cc @falaki Is this also a part of #15375 ?
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/15446
Thanks @jrshust for the PR.
Jenkins, ok to test
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/15375
Jenkins, retest this please
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/15421
Yeah it should be fine to merge this into branch-2.0 when it is ready
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/15433
@techaddict Thanks for the PR. The test failures seem related to this patch
-- Could you check why they are failing ?
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/15328
I'm not sure there is an easy way to handle this on the Java side - The max
array size in the JVM is fixed as INT_MAX and AFAIK there isn't any way around
it. Taking a step back
Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/15340
Merging into master and branch-2.0
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/15340
LGTM. Thanks @felixcheung
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/15328
Hmm - wont each object need to be deserialized on the Java side ? Will that
object deserialize succeed ? Or to put it another way, can we add an end-to-end
test that will exercise this code path
Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/15328
Can we add a unit test for this ? Also I'm not sure if my earlier comment
on Java array sizes was addressed ?
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/15328
AFAIK java arrays also have the same limitation - So if we convert lists to
arrays, this will also fail on the JVM side ?
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/15232
Thanks @HyukjinKwon - Fix looks good. But isn't it better to do the check
before we do the na.omit / as.integer ? Or will that miss some cases ?
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/15200
Yeah - so I'm thinking we should just auto-generate this and check in the
html file in git. Its not that big. When somebody updates the vignette we need
to remind them to regenerate it though
GitHub user shivaram opened a pull request:
https://github.com/apache/spark/pull/15223
Set R package version number along with mvn
## What changes were proposed in this pull request?
This PR sets the R package version while tagging releases. Note that since
R doesn't
Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/15223
cc @rxin
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/15200
The only downside of this is that we won't be uploading our vignette to the
website. I think this is fine -- Any thoughts @junyangq @felixcheung
cc @rxin
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GitHub user shivaram opened a pull request:
https://github.com/apache/spark/pull/15200
Skip building R vignettes if Spark is not built
## What changes were proposed in this pull request?
When we build the docs separately we don't have the JAR files from the
Spark build
Github user shivaram commented on a diff in the pull request:
https://github.com/apache/spark/pull/15051#discussion_r79297229
--- Diff: R/pkg/R/mllib.R ---
@@ -694,8 +694,14 @@ setMethod("predict", signature(object = "KMeansModel"),
#' }
#' @note s
Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/15131
It looks like `addFile` isn't working on Windows because we try to convert
the windows file path into a URI and that fails. Not sure what the fix is in
this case.
cc @HyukjinKwon who
Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/15100
@junyangq We need to manually close this PR as github doesn't pick up
commits not merged to master. Can you close this when you get a chance ?
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/15100
Merging this into branch-2.0
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Github user shivaram commented on a diff in the pull request:
https://github.com/apache/spark/pull/15100#discussion_r78799049
--- Diff: R/pkg/vignettes/sparkr-vignettes.Rmd ---
@@ -0,0 +1,653 @@
+---
+title: "SparkR - Practical Guide"
+output:
+ htm
Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/15097
Thanks @WeichenXu123 Can we add some test cases for this ? Also was this
fix related to any problem you saw ? If so we can also include that in the test
cases etc.
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/1
Jenkins, retest this please
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/1
Yeah the R change looks fine.
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/1
@eyalfa Yes - we get the schema from Scala and assign the column names from
that [1]. I think @hvanhovell knows more about the compatibility requirements
Also @HyukjinKwon
Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/14980
@junyangq As we discussed before, lets open a new PR for 2.0 ?
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/14980
Thanks @junyangq and @felixcheung - Merging this into master once the
AppVeyor check passes
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/1
The easiest way to debug the R test case is to see what has changed for
this particular `select` query that is failing and then update the test case.
If you have compiled with `-Psparkr
Github user shivaram commented on a diff in the pull request:
https://github.com/apache/spark/pull/15051#discussion_r78406032
--- Diff: R/pkg/R/mllib.R ---
@@ -694,8 +694,8 @@ setMethod("predict", signature(object = "KMeansModel"),
#' }
#' @note s
Github user shivaram commented on a diff in the pull request:
https://github.com/apache/spark/pull/15051#discussion_r78301160
--- Diff: R/pkg/R/mllib.R ---
@@ -694,8 +694,8 @@ setMethod("predict", signature(object = "KMeansModel"),
#' }
#' @note s
Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/14980
Yeah I think it'll be good to do a separate PR and make sure it can build
corresponding to the Scala code in branch-2.0 etc. But lets do it after all the
comments here are addressed
Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/15015
Thanks @keypointt - Merging into master
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Github user shivaram closed the pull request at:
https://github.com/apache/spark/pull/15029
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Github user shivaram closed the pull request at:
https://github.com/apache/spark/pull/15031
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GitHub user shivaram opened a pull request:
https://github.com/apache/spark/pull/15031
[DUMMY][SPARKR] Test AppVeyor with a change in R/
Dummy pull request to `branch-1.6` test AppVeyor integration. Do not merge
You can merge this pull request into a Git repository by running
GitHub user shivaram opened a pull request:
https://github.com/apache/spark/pull/15029
[DUMMY][SPARKR] Test AppVeyor with a change in R/
Dummy pull request to test AppVeyor integration. Do not merge
You can merge this pull request into a Git repository by running:
$ git pull
Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/14980
@junyangq @felixcheung Is this good to be merged ? Also some of ML
algorithms are not present in 2.0.0, so we might need to remove them from the
vignette when backporting ?
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/14980
Hmm the Jenkins error was
```
find: cannot delete `pkg/vignettes': Directory not empty
```
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/15015
Created https://issues.apache.org/jira/browse/INFRA-12590
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/15015
I think we need to file an INFRA ticket like
https://issues.apache.org/jira/browse/INFRA-11294 -- I'll file one now
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/15015
@HyukjinKwon I thought it should have run the tests ? Any ideas why its not
getting picked up ? Is there some other set of steps that we need to do ? (I'm
now investigating how it works for Apache
Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/14784
@zjffdu Sorry for the delay. I think the change looks pretty good. We could
just add a `logWarning` in case we find a collision ? Also could you bring this
up to date with the master branch
Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/14980
It looks like the tests are failing because of a new CRAN check `NOTE`
about the file `derby.log` not being cleaned up from `vignettes/`. I also
noticed that `people.parquet` is created in my
Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/14859
Alright, I'm merging this into master. Lets see how this goes in the next
few days and we can fine tune this with some follow up PRs if necessary.
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/15010
Merging into master, branch-2.0
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/15010
LGTM - @falaki any more comments ?
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/15010
Thanks - the new test looks good
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/15007
@falaki We can use the PR at https://github.com/apache/spark/pull/15010 and
close this one ?
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Github user shivaram commented on a diff in the pull request:
https://github.com/apache/spark/pull/14859#discussion_r77945551
--- Diff: appveyor.yml ---
@@ -0,0 +1,51 @@
+# Licensed to the Apache Software Foundation (ASF) under one or more
+# contributor license agreements
Github user shivaram commented on a diff in the pull request:
https://github.com/apache/spark/pull/15010#discussion_r77944989
--- Diff: R/pkg/inst/tests/testthat/test_sparkSQL.R ---
@@ -243,7 +243,15 @@ test_that("read csv as DataFrame", {
expect_equal(count(with
Github user shivaram commented on a diff in the pull request:
https://github.com/apache/spark/pull/14859#discussion_r77944576
--- Diff: appveyor.yml ---
@@ -0,0 +1,51 @@
+# Licensed to the Apache Software Foundation (ASF) under one or more
+# contributor license agreements
Github user shivaram commented on a diff in the pull request:
https://github.com/apache/spark/pull/15010#discussion_r77944380
--- Diff: R/pkg/inst/tests/testthat/test_sparkSQL.R ---
@@ -243,7 +243,15 @@ test_that("read csv as DataFrame", {
expect_equal(count(with
Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/15008
@HyukjinKwon I think you might need to manually close this PR
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/14859
Thanks. I'll merge this once Jenkins passes
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/15008
Thanks - Merging this to branch-2.0
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Github user shivaram commented on a diff in the pull request:
https://github.com/apache/spark/pull/15007#discussion_r77934359
--- Diff: R/pkg/R/DataFrame.R ---
@@ -2635,7 +2635,7 @@ setMethod("write.df",
write <- callJMethod(df@sdf, "write")
Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/14859
LGTM pending the inline comment about hadoop-2.6
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Github user shivaram commented on a diff in the pull request:
https://github.com/apache/spark/pull/14859#discussion_r77920251
--- Diff: appveyor.yml ---
@@ -0,0 +1,51 @@
+# Licensed to the Apache Software Foundation (ASF) under one or more
+# contributor license agreements
Github user shivaram commented on a diff in the pull request:
https://github.com/apache/spark/pull/14980#discussion_r77873869
--- Diff: R/create-docs.sh ---
@@ -43,4 +45,7 @@ Rscript -e 'libDir <- "../../lib"; library(SparkR,
lib.loc=libDir); library(knit
Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/14980
@junyangq - Looks like we should also load SparkR in `create-docs.sh` --
The error in Jenkins is
```
Quitting from lines 22-23 (sparkr-vignettes.Rmd)
Error in library(SparkR
Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/14980
Jenkins, retest this please
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/14993
cc @keypointt
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/14980
FYI - @shaneknapp is helping us get the requisite packages installed to
build this on Jenkins. https://issues.apache.org/jira/browse/SPARK-17420 is the
relevant JIRA
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/14859
@HyukjinKwon Given that the build is green after #14960 is this good to go
? Any other comments @dongjoon-hyun @srowen
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/14980
Jenkins, retest this please
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/14783
Thanks for the update. LGTM. Merging this to master and branch-2.0
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/14960
Looks like it passed ! LGTM pending our Jenkins tests
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Github user shivaram commented on a diff in the pull request:
https://github.com/apache/spark/pull/14783#discussion_r77763061
--- Diff: R/pkg/R/utils.R ---
@@ -697,3 +697,18 @@ is_master_local <- function(master) {
is_sparkR_shell <- function() {
grepl("
Github user shivaram commented on a diff in the pull request:
https://github.com/apache/spark/pull/14783#discussion_r77762250
--- Diff: R/pkg/R/utils.R ---
@@ -697,3 +697,18 @@ is_master_local <- function(master) {
is_sparkR_shell <- function() {
grepl("
Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/14783
Sorry for the delay @clarkfitzg - The code change looks pretty good to me.
I just had one question about mixed type columns.
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Github user shivaram commented on a diff in the pull request:
https://github.com/apache/spark/pull/14783#discussion_r77757807
--- Diff: R/pkg/R/utils.R ---
@@ -697,3 +697,18 @@ is_master_local <- function(master) {
is_sparkR_shell <- function() {
grepl("
Github user shivaram commented on a diff in the pull request:
https://github.com/apache/spark/pull/14960#discussion_r77751910
--- Diff: core/src/main/scala/org/apache/spark/SparkContext.scala ---
@@ -992,7 +992,7 @@ class SparkContext(config: SparkConf) extends Logging
Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/14960
Thanks @HyukjinKwon - LGTM but for a minor comment I had inline.
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Github user shivaram commented on a diff in the pull request:
https://github.com/apache/spark/pull/14960#discussion_r77665699
--- Diff: core/src/main/scala/org/apache/spark/SparkContext.scala ---
@@ -992,7 +992,7 @@ class SparkContext(config: SparkConf) extends Logging
Github user shivaram commented on a diff in the pull request:
https://github.com/apache/spark/pull/14960#discussion_r77573002
--- Diff: core/src/main/scala/org/apache/spark/util/Utils.scala ---
@@ -1900,7 +1900,20 @@ private[spark] object Utils extends Logging
Github user shivaram commented on a diff in the pull request:
https://github.com/apache/spark/pull/14960#discussion_r77572574
--- Diff: core/src/main/scala/org/apache/spark/util/Utils.scala ---
@@ -1900,7 +1900,20 @@ private[spark] object Utils extends Logging
Github user shivaram commented on a diff in the pull request:
https://github.com/apache/spark/pull/14960#discussion_r77544947
--- Diff: core/src/main/scala/org/apache/spark/util/Utils.scala ---
@@ -1900,7 +1900,20 @@ private[spark] object Utils extends Logging
Github user shivaram commented on a diff in the pull request:
https://github.com/apache/spark/pull/14960#discussion_r77544303
--- Diff: core/src/main/scala/org/apache/spark/util/Utils.scala ---
@@ -1900,7 +1900,20 @@ private[spark] object Utils extends Logging
Github user shivaram commented on a diff in the pull request:
https://github.com/apache/spark/pull/14960#discussion_r77543535
--- Diff: core/src/main/scala/org/apache/spark/util/Utils.scala ---
@@ -1900,7 +1900,20 @@ private[spark] object Utils extends Logging
Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/13690
@vectorijk Is this ready for another round of review ?
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Github user shivaram commented on a diff in the pull request:
https://github.com/apache/spark/pull/14433#discussion_r77443065
--- Diff: core/src/main/scala/org/apache/spark/internal/Logging.scala ---
@@ -135,7 +135,8 @@ private[spark] trait Logging {
val replLevel
Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/14433
Merged into master
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/14942
Thanks - Merging this into master, branch-2.0
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/14942
cc @felixcheung
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/14939
Ah thanks - I didn't notice this while merging the earlier PR.
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/14934
LGTM. Merging into master, branch-2.0
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Github user shivaram commented on a diff in the pull request:
https://github.com/apache/spark/pull/14934#discussion_r77381083
--- Diff: R/pkg/R/functions.R ---
@@ -2876,7 +2876,8 @@ setMethod("randn", signature(seed = "numeric"),
#' regexp_extract
Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/14935
Merged into master, branch-2.0
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Github user shivaram commented on a diff in the pull request:
https://github.com/apache/spark/pull/14934#discussion_r77375452
--- Diff: R/pkg/R/functions.R ---
@@ -2876,7 +2876,8 @@ setMethod("randn", signature(seed = "numeric"),
#' regexp_extract
Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/14433
LGTM. Thanks @wangmiao1981 -- I'll keep this open for a bit to see if there
are any more comments.
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/14935
LGTM. I actually think this might also be useful in 2.0.1 ?
cc @junyangq
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Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/13584
LGTM - @felixcheung Feel free to merge when its ready
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Github user shivaram commented on a diff in the pull request:
https://github.com/apache/spark/pull/14433#discussion_r77261262
--- Diff: core/src/main/scala/org/apache/spark/internal/Logging.scala ---
@@ -135,7 +136,12 @@ private[spark] trait Logging {
val replLevel
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