[SIESTA-L] The meaning of semicore state

2009-07-13 Thread shihitwh
Dear all, Some pseudopotential includes semicore state.I wonder what is the meaning of semicore state and which element includes semicore state? Best wishes! Shi 2009.7.13 200万种商品,最低价格,疯狂诱惑你 200万种商品,最低价格,疯狂诱惑你

[SIESTA-L] orderN problem

2009-06-29 Thread shihitwh
Dear users, I use the orderN to calculate a system of containing 300 atoms. At the begging of the program, it shows that: iodm: Reading Density Matrix from files chkdim: ERROR: In iodm, dimension maxnd = 1241713. It must be at least 1249238 Stopping Program from Node:0 forrtl: severe

[SIESTA-L] phonon calculation

2009-06-17 Thread shihitwh
Dear all, I want to run MD.typeofrun FC, and my system has 330 atoms. I must use solutionmethod diagon ? Can I use orderN to operate FC ? Best Wishes! Shi

[SIESTA-L] how to deal with fermi energy when I plot the density of states

2009-06-09 Thread shihitwh
Dear siesta users, I have calculated the DOS file, I plot the density of states with Origin.When I plot the density of states, I get a problem. How can I plot Energy relative to the Fermi energy? I means how I can add the Fermi energy to the density of states. Best Wishes! Shi

[SIESTA-L] Fermi energy problem in density of states

2009-06-08 Thread shihitwh
Dear siesta users, I have read the siesta-2.0.2 manual, and I wonder the ProjectedDensityOfStates. The manual said that The block must be a single line with the energies of the range for PDOS projection, (relative to the program's zero, i.e. the same as the eigenvalues printed by the program),

[SIESTA-L] how to deal with fermi energy when I plot the density of states

2009-06-08 Thread shihitwh
Dear siesta users, I have calculated the DOS file, I plot the density of states with Origin.When I plot the density of states, I get a problem. How can I plot Energy relative to the Fermi energy? I means how I can add the Fermi energy to the density of states. Best Wishes! Shi

[SIESTA-L] Fermi energy problem in density of states

2009-06-05 Thread shihitwh
Hi,everyone I have read the siesta-2.0.2 manual, and I wonder the ProjectedDensityOfStates. The manual said that The block must be a single line with the energies of the range for PDOS projection, (relative to the program's zero, i.e. the same as the eigenvalues printed by the program), the

Re: [SIESTA-L] Posible SPAM: Citation for ATOM

2009-06-01 Thread shihitwh
Dear Nemec, Here are some articles about citaion of Atom. Original idea of the ab-initio pseudopotential: Kerker, J. Phys. C 13, L189-94 (1980) Hamann, Schluter, Chiang, Phys. Rev. Lett. 43, 1494 (1979) More on HSC scheme: Bachelet, Schluter, Phys. Rev. B 25, 2103 (1982) Bachelet, Hamann,

[SIESTA-L] NaN problem in the documents

2009-05-21 Thread shihitwh
Hi, everybody I get NaN in the document in the accessory. What does NaN mean? How can I solve this prolem? Best Wishes! Shi 穿越地震带 纪念汶川地震一周年 a.Mode_1.AXSF Description: Binary data

[SIESTA-L] vib2xsf problem

2009-05-20 Thread shihitwh
Hi,everyone: When I deal with the MD.type of run FC, I get a problem of vibrator. [siesta]$ vibrator in.fdf redata: System Name = Mg(BH4)2

[SIESTA-L] how to calculate phonon density of states

2009-05-19 Thread shihitwh
Hi,everybody, I deal with the examples in the siesta-2.0.2/Util/Vibra/Examples.But it does not say how to calculate phonon density of states. I want to know how to calculate phonon density of states. Can you help me? Best Wishes!

[SIESTA-L] another vib2xsf problem

2009-05-17 Thread shihitwh
Hi,everybody The last problem has been solved.Thank you very much!But I get another problem.I use vib2xsf to visualize the phonons and use the example si54 in siesta-2.0.2/Util/Vibra/Examples. I use vib2xsf as follows: ./vib2xsf Specify SystemLabel (or 'siesta' if none): si54 dstmin=