Re: [SIESTA-L] Convergence problem on heterostructure.

2013-11-22 Por tôpico Максим Арсентьев
Dear Sebastian! My calculations convverge at each MD cycle (about 300-400 SCF cycles), but max force oscillate (about 0.1-0.04 eV/anstrom) and I can not finish MD, and am already at 63 cycle and the calculation cycle is still going, although the system is quite large and contains 47 atoms. My

Re: [SIESTA-L] Convergence problem on heterostructure.

2013-11-22 Por tôpico Herbert Fruchtl
Just to clarify: You are doing MD, not a geometry optimisation, and you are surprised that the forces don't go to zero? What are you trying to find? For a minimum energy structure, you need a geometry optimisation. In an MD simulation the total (potential+kinetic) energy should remain constant

Re: [SIESTA-L] Convergence problem on heterostructure.

2013-11-22 Por tôpico Максим Арсентьев
I'm doing geometry optimisation if I correctly set it (as I understand it's by default) Best Wishes, Maxim. 2013/11/22 Herbert Fruchtl herbert.fruc...@st-andrews.ac.uk Just to clarify: You are doing MD, not a geometry optimisation, and you are surprised that the forces don't go to zero? What

Re: [SIESTA-L] Convergence problem on heterostructure.

2013-11-22 Por tôpico Herbert Fruchtl
From the manual (3.1, so possibly out of date): MD.TypeOfRun (string): ... Default value: Verlet (CG for one-atom systems) You want CG. HTH, Herbert On 22/11/13 09:38, Максим Арсентьев wrote: I'm doing geometry optimisation if I correctly set it (as I understand it's by default) Best

Re: [SIESTA-L] Convergence problem on heterostructure.

2013-11-22 Por tôpico fmaier
A fluctuation in max. forces is normal. Attached is a max. force graph of a few CG geometry optimizations I did of isolated molecules. Further details are in the following PDF: (keyword EggBox Effect) http://www.home.uni-osnabrueck.de/apostnik/Lectures/SIESTA-tuto.pdf So the lower the max. force

Re: [SIESTA-L] Dynamical matrix

2013-11-22 Por tôpico shanghui
HI barnali, I think your output method is right. Hui 2013/11/21 Barnali Bhattacharya barnalidgbh...@gmail.com sir, I am trying to calculate the dynamical matrix of benzene by using Vibra from siesta Utility. I have compiled both fcbuild.f and vibrator.f first and used the fcbuild in