Re: [SIESTA-L] negative PDOS

2015-04-12 Por tôpico Suman Chowdhury
Can you provide us any reference.. On Sun, Apr 12, 2015 at 1:23 PM, fthe...@iesl.forth.gr wrote: This is a well known problem, but has not to do with SIESTA. It has to do with the physical meaning of the decomposition of DOS to PDOS. If you decompose to orbitals with different orientation you

[SIESTA-L] negative PDOS

2015-04-12 Por tôpico BingHuang
Dear siesta users, Has any one encountered the problem of negative value of projected DOS which is calculated with the mprop utility? It seems quite unreasonable for me, any ideas how this come out? Best regards, Bing

Re: [SIESTA-L] negative PDOS

2015-04-12 Por tôpico Suman Chowdhury
I got the negative values of the PDOS while using double zeta polarized basis set implemented within the SIESTA...Are these basis sets non-orthogonal? On Sun, Apr 12, 2015 at 1:40 PM, Emilio Artacho ea...@cam.ac.uk wrote: The mentioned well-known problem is related with the use of

Re: [SIESTA-L] negative PDOS

2015-04-12 Por tôpico Suman Chowdhury
Thanks for the post...I have also encountered the same problem...Still I don't understand what is the reason for this unreasonable PDOS... On Sun, Apr 12, 2015 at 1:01 PM, BingHuang hbdft2...@gmail.com wrote: Dear siesta users, Has any one encountered the problem of negative value of

Re: [SIESTA-L] negative PDOS

2015-04-12 Por tôpico Emilio Artacho
The mentioned well-known problem is related with the use of non-orthogonal basis sets. For orthogonal ones the PDOS is definite positive, which is what people expect. But for non-orthogonal ones that is not the case (although negatve values tend to be small since the diagonal bit dominates and

Re: [SIESTA-L] negative PDOS

2015-04-12 Por tôpico fthenak
I fully agree with Emilio. The fact that you find negative PDOS even for s orbitals has to do with the interactions between those s-orbitals with the orbitals of the other atoms, which might give small negative contributions. If you select different orientations of the atoms, you may have

Re: [SIESTA-L] negative PDOS

2015-04-12 Por tôpico Suman Chowdhury
In this situation my question is suppose I have obtained negative PDOS for a particular structure. If I will give this values in the manuscript and send to any journal for publication and if the referee will ask about this then what should I do? On Sun, Apr 12, 2015 at 3:05 PM,

[SIESTA-L] Fused quartz Structure

2015-04-12 Por tôpico Younas Khan
Hi all. I want to generate amorphous SiO2 (fused quartz) structure for my simulation. I searched it in materials studio but could not find it. any suggestions from your side? Younas Khan