Re: [SIESTA-L] problem with vibrational frequencies

2009-07-19 Thread apostnik
> Has anyone had experience using SIESTA to calculate degenerate > frequencies? > Even if I force exact symmetry in the unit cell, I get very non-degenerate > frequencies when they should be identical. Could I be doing something > wrong > or is this a numerical limitation with SIESTA? > > Thanks, >

Re: [SIESTA-L] the problem in compiling rho2xsf.f

2009-07-19 Thread apostnik
> Dear all, > when i compiling the rho2xsf.f , there are somr error notes: > > rho2xsf.f(160): (col. 15) remark: LOOP WAS VECTORIZED. > /tmp/ifortiXeCLr.o: In function `MAIN__': > rho2xsf.f:(.text+0x753): undefined reference to `test_xv_' > rho2xsf.f:(.text+0xb53): undefined reference to `rea

[SIESTA-L] Pseudopotential and basis set for Carbon atoms in graphene

2009-07-19 Thread Elham Beheshti
Dear All, I am a new user of Siesta. I am working on graphene and Zigzag Carbon nanotubes. I am trying to make the basis set and pseudopotentials for carbon myself and I have 2 questions: 1. What is exactly the ionic charge in the PAO.Basis block? %Block PAO.Basis C3 .35201 (ionic

[SIESTA-L] 2D cell optimization

2009-07-19 Thread Herbert Fruchtl
I would like to optimise a 2-dimensional sheet with a sufficient vacuum slab to keep it non-interacting in in Z direction. The description of the required routine "constr" for imposing constraints is rather terse... Could somebody tell me how to freeze the Z direction of the cell dimensions, but n

Re: [SIESTA-L] 2D cell optimization

2009-07-19 Thread Hui Tang
%block GeometryConstraints stress 3 4 5 %endblock GeometryConstraints You might want to read the manual carefully. Hui Herbert Fruchtl wrote: I would like to optimise a 2-dimensional sheet with a sufficient vacuum slab to keep it non-interacting in in Z direction. The description of the requ

Re: [SIESTA-L] the problem in compiling rho2xsf.f

2009-07-19 Thread jw wei
> > Dear Andrei Postnikov: Thank you very much for your kindly reply. certainly, want compile the rho2xsf as a standalone code for converting SIESTA results (structure, charge densities, molecular dynamics, phonons, Fermi surfaces) for vizualization with XCrySDen . I have updated the Sies2xs