The Mascot format, Mascot generic file or MGF, represents spectra. The
FASTA format is used to represent sequences. They are two different things
and it doesn't make sense to want to convert one to the other. Figure out
what you really need and possibly follow-up here.
On Wed, Apr 29, 2015 at 1
Dear colleagues of bioinformatics,
Anyone know some way to convert mascote format (mass) to Fasta outside of
program Maxquant(www.maxquant.org), because such conversion is not
specified.
the Mascot generic formate is a plain text (ASCII) file containing peak
list information and contain a
Hi,
There may be several things going on here, which will require a new copy of
PTMProphet for you to process the results. I think that you are using an
older version of PTMProphet which has seen recent improvements to cover
more PTM user cases. PTMProphet compares the internally calculated mass
