For a huge run, irrespective of whether it's converted in profile or
centroid mode (the # of MS/MS scans is more important), be sure to set the
parameter "spectrum_batch_size" to something non-zero. If this parameter
value is set to 0, Comet will try to load all spectra into memory at once.
With y
Also note that Petunia (the TPP GUI) may not be able to get the status for
jobs that take very long to finish due to the web server timing out (>6
hours, by default). In this case, the job will keep running and hopefully
finish, but the interface will not know about it.
You can tell if this is th
Aha, that’s probably the problem. During your conversion from wiff to mzML,
you should turn ON peak picking. Otherwise your profile mode data will be
huge and the searches will take a very long time.
Regards,
Eric
*From:* Joel Christie [mailto:joel.jo.chris...@gmail.com]
*Sent:* Tuesday, J
Well, normally it should not, but depending on your data file(s) and
parameters you’ve set as well as the computer you’re running on, it
certainly may. Comet very rarely just keeps running without making
progress, so the search you’ve specified is probably just too expensive for
the computing power
Hi Chris,
I am not sure about TPPv5 and Win10... do you see any error ?
Is there any information in Apache logs (\logs\...).
Regards
Vishal
On Tue, Jan 24, 2017 at 12:01 PM, Chris Barnes
wrote:
> Hi Luis/Val,
>
> Thanks for your help. I'm trying to install TPP 5.0 on a Windows 10
> Virtual M
Thanks it worked for me. Now I have different problem.Its been two days
still Comet search is not over. I don't know whether it should take this
much of time?
On Saturday, 21 January 2017 00:25:08 UTC+5:30, Eric Deutsch wrote:
>
> Hi Joel, the problem is a space in your folder names. Some tools
Hi Luis/Val,
Thanks for your help. I'm trying to install TPP 5.0 on a Windows 10
Virtual Machine that is reading from another remote drive. The drive is
always mapped when I start up the VM and it is always mapped to the same
letter. I tried installing the TPP to read from the C: drive and i
