Re: [spctools-discuss] Analyze peptides- error

2017-11-19 Thread Elkan Dong
8SCX.pep.xml" -L"5"" Regards, Elkan 在 2017年11月17日星期五 UTC+8下午10:47:29,David Shteynberg写道: > > Hello Elkan, > > Although unlikely, the dashes in your filename could be the issue. In my > email on this thread I mentioned that only alphanumerics and underscore

Re: [spctools-discuss] Analyze peptides- error

2017-11-17 Thread Elkan Dong
I'm using the newest version of TPP, but encountered the same error when using PeptideProphet. The file name I used looks like I08-F4-SAX1.pep.xml Any solution? Thanks. Elkan 在 2017年6月20日星期二 UTC+8上午1:28:34,David Shteynberg写道: > > Hello Ada, > > One immediate problem I notice is that your

[spctools-discuss] Peptide identification using AB SCIEX Raw data

2017-10-24 Thread Elkan Dong
Dear all, I have raw data derived from AB SCIEX TripleTOF 5600 and protein identification results obtained from ProteinPilot using MGF files converted by AB SCIEX MS Converter. Now I want to use other search engines like Comet or X!Tandem to search the data again. So I converted to raw data to