Hello Joseph,
There is no support for the ProteomeDiscoverer pepXML file in the TPP. But
the TPP comes with the open-source and free comet search engine, which
should be comparable to sequest. However, if you are able to post your
pepXML file I may be able to change the code to implement support
Hello,
I recently discovered TPP and have been trying to analyze my recent data
from Proteome Discoverer 2.2 with PeptideProphet and every time I try to
analyze the .pep.xml file that Proteome Discoverer exports I get the error
below. I've downloaded the tutorial set and that worked fine and i
