That's xinteract trying to do some preprocessing for the pepXML viewer,
which of course isn't desirable for your purposes. You'll need to alter
xinteract.cxx to skip that step (as will I in the SVN copy).
As you can see it's been some time since CPAS and TPP got synchronized, but
I'm happy to
Thanks for your offer. I gladly accept.
I'll try rebuilding with the lines that run ProphetModels.pl and
ProtProphetModels.pl commented out and let you know how it goes.
Bill
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Okay, that worked. I also had to comment out the execution of
PepXMLViewer.cgi.
So, when ProteinProphet finishes it leaves behind a new file:
java.io.IOException: Failed to remove work directory /raid/labkey/Test/
Human Standard/xtandem/test8/UPS1-01.work unexpected files found:
I'm not sure what that's for. I'll ask some other developers.
-Original Message-
From: spctools-discuss@googlegroups.com
[mailto:spctools-disc...@googlegroups.com] On Behalf Of bill
Sent: Wednesday, May 20, 2009 12:17 PM
To: spctools-discuss
Subject: [spctools-discuss] Re: XML_ONLY
I did try to use the trunk but I couldn't get it to compile on this
machine. GCC4.4 was installed just recently and the conflicts make it
tough going. Plus, I'm okay at commenting things out but I only have
basic C++ skills.
Judging by the comments in the code, the _senserr.txt file isn't
needed
to be inside the
getIsInteractiveMode() check, I'll fix that in trunk as well.
-Original Message-
From: spctools-discuss@googlegroups.com
[mailto:spctools-disc...@googlegroups.com] On Behalf Of bill
Sent: Wednesday, May 20, 2009 12:57 PM
To: spctools-discuss
Subject: [spctools-discuss] Re
