[spctools-discuss] Re: problem for the tpp ananlysis with indexed database

2009-09-08 Thread Eileen Yue
@googlegroups.com Subject: [spctools-discuss] Re: problem for the tpp ananlysis with indexed database Eileen, It should work. As Brian suggested, post the error/log message so that we can see what the problem actually is to help you fix it. - Jimmy On Fri, Sep 4, 2009 at 1:15 PM, Eileen Yuey

[spctools-discuss] Re: problem for the tpp ananlysis with indexed database

2009-09-08 Thread Jimmy Eng
Of Jimmy Eng Sent: 04 September 2009 19:13 To: spctools-discuss@googlegroups.com Subject: [spctools-discuss] Re: problem for the tpp ananlysis with indexed database Eileen, It should work.  As Brian suggested, post the error/log message so that we can see what the problem actually is to help

[spctools-discuss] Re: problem for the tpp ananlysis with indexed database

2009-09-08 Thread David Shteynberg
2009 19:13 To: spctools-discuss@googlegroups.com Subject: [spctools-discuss] Re: problem for the tpp ananlysis with indexed database Eileen, It should work.  As Brian suggested, post the error/log message so that we can see what the problem actually is to help you fix it. - Jimmy

[spctools-discuss] Re: problem for the tpp ananlysis with indexed database

2009-09-08 Thread David Shteynberg
: spctools-discuss@googlegroups.com [mailto:spctools-disc...@googlegroups.com] On Behalf Of Jimmy Eng Sent: 04 September 2009 19:13 To: spctools-discuss@googlegroups.com Subject: [spctools-discuss] Re: problem for the tpp ananlysis with indexed database Eileen, It should work.  As Brian

[spctools-discuss] Re: problem for the tpp ananlysis with indexed database

2009-09-04 Thread Brian Pratt
That's right, the indexed database format is nonstandard and TPP doesn't know how to read it. I think, though, that if you provide the nonindexed version then you can probably have it both ways. On Fri, Sep 4, 2009 at 11:05 AM, Eileen Yue y...@ohsu.edu wrote: May I check with one question?

[spctools-discuss] Re: problem for the tpp ananlysis with indexed database

2009-09-04 Thread Brian Pratt
have both nonindexed and indexed database in the folder. *From:* spctools-discuss@googlegroups.com [mailto: spctools-disc...@googlegroups.com] *On Behalf Of *Brian Pratt *Sent:* 04 September 2009 11:37 *To:* spctools-discuss@googlegroups.com *Subject:* [spctools-discuss] Re: problem

[spctools-discuss] Re: problem for the tpp ananlysis with indexed database

2009-09-04 Thread Eileen Yue
@googlegroups.com Subject: [spctools-discuss] Re: problem for the tpp ananlysis with indexed database Hello Eileen, After you made the change to the sequest.params file you would need to reconvert your search results (out file directory) to pepXML for the pepXML files to reflect the parameter