Subject: Re: [spctools-discuss] RefreshParser reports number of unmapped
entries - why are there unmapped entries?
Hi Brian,
It appears that all of the UNMAPPED results are to DECOY proteins. Is it
possible that you regenerated the DECOYS at some point but kept the database
name the same
Hi Brian,
It appears that all of the UNMAPPED results are to DECOY proteins. Is it
possible that you regenerated the DECOYS at some point but kept the
database name the same? DECOYS get reshuffled so you are not guaranteed to
have the same DECOYS peptides that you had the first time you
Hi David,
Thanks for having a look. I sent you a link to the interact…pep.xml and the
database files to download at your convenience.
Brian
On Jan 29, 2019, at 1:09 PM, David Shteynberg
mailto:david.shteynb...@systemsbiology.org>>
wrote:
Hi Brian,
Can you post the files for me to trace
Hi Brian,
Can you post the files for me to trace the execution of RefreshParser and
troubleshoot the issue?
Thanks,
-David
On Tue, Jan 29, 2019 at 7:24 AM Hampton, Brian
wrote:
> Hello,
>
> I cannot determine why RefreshParser would not be able to remap all
> entries. Since the PSMs are
