Hello David,
I was looking everywhere on my OMSSA browser and in the OMSSA on line
and I really do not see any option to output pepxml or any pepxml
converter...
Are you considering that .omx files are pepxml files?
Because I could not use its on TPP...
Could you give me the steps to output
It's not in the online command-line manual, but it's in the usage
statement for omssacl:
G:\work\omssa\omssa-2.1.7.win32omssacl
USAGE
omssacl.exe [-h] [-help] [-xmlhelp] [-pm param] [-d blastdb] [-umm]
[-f infile] [-fx xmlinfile] [-fb dtainfile] [-fp pklinfile]
[-fm pklinfile] [-foms
Hi Brian, Hi Jimmy,
Thanks to both of you for your answers. Actually Jimmy was right: the
precursor was falling off the high mass cut-off.
Note that the -T option is not documented in the MzXML2Search options
(just when you run the MzXML2Search command to see the possible
options). Might be
Hi Rob,
You can get the standalone Trapper converter programmed by Natalie
Tasman here:
http://sourceforge.net/projects/sashimi/files/trapper%20%28MassHunter%20converter%29/
It's a MSDOS command line program. You should run the following
command:
C:\Program Files\trapper\trapper.exe -v -c
FWIW, the -T option actually does get a mention in the usage statement,
-Tnum where num is a float specifying maximum MH+ scan,
default=4200.0 Da
although it refers to maximum scan instead of maxmum mass, which may
have caused your eye to trip over it. I'll fix that. Thanks for the
I believe its only commandline enabled. This is something to ask the
OMSSA developers.
-David
On Tue, Nov 24, 2009 at 5:40 AM, Loïc JOFFRE loic.jof...@gmail.com wrote:
Hello David,
I was looking everywhere on my OMSSA browser and in the OMSSA on line
and I really do not see any option to
Here's what the problem was, the fomula is correct but I was using the
constants for the wrong charge state.
the spectra was a +1 but I was using the constants array position 1
instead of 0.
Thanks,
Bill
On Oct 8, 2:21 pm, Natalie Tasman natalie.tas...@insilicos.com
wrote:
Hi Bill,
We build
So, is that an error in the code or is my compiler special, that is,
do I change my local copy or has the trunk been updated?
Thanks,
Bill
On Nov 17, 5:14 pm, Brian Pratt brian.pr...@insilicos.com wrote:
Oops, I wasn't up to date after all, sorry.
Just add an (int) cast in front of that strlen
I checked in that change on Nov 17.
Brian
On Tue, Nov 24, 2009 at 1:25 PM, Bill Nelson nelson...@gmail.com wrote:
So, is that an error in the code or is my compiler special, that is,
do I change my local copy or has the trunk been updated?
Thanks,
Bill
On Nov 17, 5:14 pm, Brian Pratt
My mistake: I think I was too tired and I skipped that line.
Sorry for that and many thanks again for the tip and the solution to
my problems!
Best,
Ludovic
On Nov 24, 6:26 pm, Brian Pratt brian.pr...@insilicos.com wrote:
FWIW, the -T option actually does get a mention in the usage statement,
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