[spctools-discuss] Re: OMSSA files with PeptideProphet

2009-12-01 Thread Loïc JOFFRE
I do not have any omssacl.exe file. I am using the OMSSA Browser and to use it, I only have an OMS_Browser on which I double click to launch the Omssa browser. Where this executable can be downloaded? Thanks, Loïc On Nov 24, 2:51 pm, Matt Chambers matthew.chamb...@vanderbilt.edu wrote: It's

[spctools-discuss] Can PeptideProphet be used with any algorithm?

2009-12-01 Thread Amit Kumar Yadav
Hi, Can we use Peptide Prophet with any algorithm for which we have the APIs? We have developed a new scoring algorithm. Can we use Peptide Prophet with it? If yes, how? What do we need to do so as to incorporate it. Please give details. Thanks in advance- AKY -- You received this message

Re: [spctools-discuss] Can PeptideProphet be used with any algorithm?

2009-12-01 Thread David Shteynberg
Hi, If your search algorithm or scoring can be reported in pepXML format we can extend the TPP quite easily to integrate your algorithm. Please send such a pepXML file and the search scores that are appropriate and we will work with you to resolve any pepXML issues you might have and retool the

Re: [spctools-discuss] Re: building on windows

2009-12-01 Thread Dmitrii Tchekhovskoi
Oh well, I posted the following months ago. Today I downloaded the trunk again and all of the old fixes are still needed to build TPP.sln under MS VC++ 2005. Perhaps it will help some folks. Dmitrii (0) To avoid making changes to the original files