Simon,
To avoid the errors, convert to mzXML first and then use MzXML2Search
to generate the mgf file. I don't have my work machine handy to
verify but I assume that msconvert doesn't write mgf files in the same
format that the TPP needs for full compatibility. Specifically the
TPP expects speci
Hello Ludovic,
Yes, I see that there is a difference in the output files. I think
the problem is that the output of probabilities and fvals is
misaligned from the spectra in the pep.xml file. You'll see that the
next spectrum has the correct value. This definitely points to a bug
in the 4.3 ver
OK so I was able to figure out how how to set the PATH for the
webserver user and eradicated that error. That still leaves me with
the following error in the browser:
Unable to access xml file via webserver, so cannot check xml file for
changes ()
Check webserver configuration if desired.
(URL: u
Hi David,
No, I confirm again that I do find a difference upon running the
xinteract command with the files in different orders (I confirm I also
see those differences on TPP 4.3.1 installed on Unix and on
WindowsXP).
I have re-run the command on the same folder, on the same files, to
avoid any co
