a solution to this issue!
>
> Thanks,
> -David
>
> On Jan 10, 2024, at 4:24 AM, Alex Gao wrote:
>
> Hi David,
>
> I do not know why. The data was acquired on MassLynx by a Waters Xevo QTOF
> set to fast DDA, with scan times of MS1 and MS2 set to both 1s with 10 MS2
utput by msconvert?
>
> Thanks,
> -David
>
> On Jan 5, 2024, at 4:17 AM, Alex Gao wrote:
>
> Hi David,
>
> Thank you for your prompt feedback! The file can be found at the link
> below.
>
>
> https://drive.google.com/file/d/1QulcwZ3UP7pcMtECNwubd4DysqaDq4UN/
o upload your file to an online drive
> and give me access to it, I can pull it down and try to convert it myself.
> Let me know what works for you.
>
> Cheers!
> -David
>
> On Jan 3, 2024, at 4:32 AM, Alex Gao wrote:
>
> Hi guys,
>
> So I've used TPP bef
Hi guys,
So I've used TPP before to convert bottom up proteomic Thermo raw files in
msconvert, comet search with custom params file, and xinteract to perform
protein prophet with no issues. Earlier this year, I performed the same
with Waters. Raw file, although in the beginning there was an
