[spctools-discuss] validated pep.xml files

Dear All, I am wondering if anybody can help with a basic question: What is the command for xinteract to keep only PeptideProphet validated hits for each individual pep.xml file? Many thanks, Cristian -- You received this message because you are subscribed to the Google Groups spctools

[spctools-discuss] file permissions under Petunia/Windows

Dear All, We have problems seeing files in Petunia (Windows) under working data directory of TPP installed on LInux. We get this message Attempted to access forbidden directory. The file permitions are rw for all files/directories. Could anybody suggest a fix? Thank you, Cristian -- You

[spctools-discuss] database error

Hi All, After running Peptide Prophet, I get the error message pasted below. I updated the database paths and I still get the following error. Could you suggest a fix for this error message? Thanks a lot, Cristian running: C:/Inetpub/tpp-bin/DatabaseParser interact.pep.xml command completed

[spctools-discuss] error analyzing InSpecT results (pepxml) with PeptideProphet

Dear All, I am trying to analyze InSpecT results on pepxml format with TPP. I copied below the error message that TPP generates. Any help will be greatly appreciated. Cheers, Cristian run_in c:/Inetpub/wwwroot/ISB/data/try; c:\Inetpub\tpp-bin\xinteract -Ninteract0209.pep.xml -p0.05 -l7 -O c