Thanks Kristian.
I think you have summed up the situation well. I did use Tandem ETD in
previous just like you told, but CYCLONE release of X!Tandem says it has
incorporated rules found by pFind group. So, if I have to use it like the
way I did earlier, I am just curious how do they implement
The latest ProteinProspector performs as well as pfind if used properly. See
the 2011 abrf iprg study on etd analysis. Does pfind write pepxml?
-Matt
On Jul 26, 2011 2:00 AM, Amit Yadav amit007thech...@gmail.com wrote:
Thanks Kristian.
I think you have summed up the situation well. I did use
I know Massmatrix (free/open-source) accepts ETD, ECD and CID/ETD. It
is easy to install. It is a nice piece of software.
DD
On Jul 25, 5:45 am, Amit Kumar Yadav amit007thech...@gmail.com
wrote:
Dear All,
I want to know about some ETD search tools, preferably free/open-source.
I tried
I've used OMSSA and X!Tandem with ETD data. I get slightly different
results, but that's to be expected from different search engines. I
haven't tried X!Tandem Tornado yet, but in previous versions all you
had to do to search ETD data was specify c and z ions and exclude
a,b,x,y ions. See
